varfish-annotator | Annotate variants for import into VarFish server | Data Labeling library
kandi X-RAY | varfish-annotator Summary
kandi X-RAY | varfish-annotator Summary
Annotation of VCF file for import into VarFish (through Web UI).
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Top functions reviewed by kandi - BETA
- The main entry point
- Runs the command
- Insert a variant context into the database
- Create a genotype record from a list of strings
- Checks if a vcf header is compatible with the vcf header
- Compares two genotypes
- Compares two FeatureEffects
- Checks if a vcf header is compatible with NDCV format
- Checks if a VCF header is compatible with
- Read the version from a VCF file
- Determine whether the VCF header line is compatible with this Variant
- Checks if a VCF header is compatible with this VCF header
- Creates a hashCode of this variant
- Return this object as a map
- Checks if an input stream is gzipped
- Returns true if the VCF header is compatible with this VCF header
- Sets the sample genotype
- Get all bins that overlap between two intervals
- Extract the genotype
- Sets the variant genotype
- Compares two VariantDescription objects
- Build a string representation of this query
- Compares two SampleGenotypes
varfish-annotator Key Features
varfish-annotator Examples and Code Snippets
Community Discussions
Trending Discussions on Data Labeling
QUESTION
I'm trying to make a data labeling in a table, and I need to do it in such a way that, in each row, the index is repeated, however, that in each column there is another Enum class.
What I've done so far is make this representation with the same enumerator class.
A solution using the column separately as a list would also be possible. But what would be the best way to resolve this?
...ANSWER
Answered 2021-Dec-30 at 13:57Instead of using Enum you can use a dict mapping. You can avoid loops if you flatten your dataframe:
QUESTION
I have a dataframe that contains a column that includes strings separeted with semi-colons and it is followed by a space. But unfortunately in some of the strings there is a semi-colon that is not followed by a space.
In this case, This is what i'd like to do: If there is a space after the semi-colon we do not need a change. However if there are letters before and after the semi-colon, we should change semi-colon with space
i have this:
...ANSWER
Answered 2020-Nov-16 at 07:24Try something like:
QUESTION
Objective: Generate a down-sampled FileDataset using random sampling from a larger FileDataset to be used in a Data Labeling project.
Details: I have a large FileDataset containing millions of images. Each filename contains details about the 'section' it was taken from. A section may contain thousands of images. I want to randomly select a specific number of sections and all the images associated with those sections. Then register the sample as a new dataset.
Please note that the code below is not a direct copy and paste as there are elements such as filepaths and variables that have been renamed for confidentiality reasons.
...ANSWER
Answered 2020-Oct-27 at 22:39Is the data behind virtual network by any chance?
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install varfish-annotator
You can use varfish-annotator like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the varfish-annotator component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .
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