vcfpy | Python 3 library with good support | File Utils library

 by   bihealth Python Version: 0.13.8 License: MIT

kandi X-RAY | vcfpy Summary

kandi X-RAY | vcfpy Summary

vcfpy is a Python library typically used in Utilities, File Utils applications. vcfpy has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install vcfpy' or download it from GitHub, PyPI.

Python 3 library with good support for both reading and writing VCF
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            kandi-support Support

              vcfpy has a low active ecosystem.
              It has 73 star(s) with 13 fork(s). There are 6 watchers for this library.
              There were 2 major release(s) in the last 12 months.
              There are 6 open issues and 40 have been closed. On average issues are closed in 56 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of vcfpy is 0.13.8

            kandi-Quality Quality

              vcfpy has 0 bugs and 0 code smells.

            kandi-Security Security

              vcfpy has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              vcfpy code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              vcfpy is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              vcfpy releases are not available. You will need to build from source code and install.
              Deployable package is available in PyPI.
              Build file is available. You can build the component from source.
              vcfpy saves you 2973 person hours of effort in developing the same functionality from scratch.
              It has 6360 lines of code, 559 functions and 51 files.
              It has medium code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed vcfpy and discovered the below as its top functions. This is intended to give you an instant insight into vcfpy implemented functionality, and help decide if they suit your requirements.
            • Return a dictionary containing the command - line tool
            • Flush the buffer
            • Write data
            • Write a block of data to the stream
            • Get the version information from the VCS
            • Parse records
            • Process a single sample line
            • Parse a single line of VCF header line
            • Parse header line
            • Parse a single line
            • Check all filters
            • Handles calls
            • Check that the filter is valid
            • Create versioneer config file
            • Install vcs
            • Validate the INFO field
            • Binary binomial function
            • Run a single call
            • Set the genotype
            • Write record to file
            • Add filter
            • Run the reader
            • Add a filter line to the header
            • Run the checks
            • Parse requirements file
            • Extract the version information
            • Scans the setup py and returns a list of dictionaries
            Get all kandi verified functions for this library.

            vcfpy Key Features

            No Key Features are available at this moment for vcfpy.

            vcfpy Examples and Code Snippets

            No Code Snippets are available at this moment for vcfpy.

            Community Discussions

            QUESTION

            Android 11: Send e-mail with automatically attached file
            Asked 2021-Jun-02 at 13:39

            I want open and email app with already generated text, subject, recipient and attached file, it works with android sdk version 29 (android 10) and lower. However starting Android 11 there are restriction to writing file in external or internal storages, and there is also another restriction that is not allowed to attach file automatically from app file directory. Previously I was copying from app storage to internal or external storage to attach file, any solutions?

            done android:requestLegacyExternalStorage="true"

            ...

            ANSWER

            Answered 2021-Jun-02 at 13:39

            I have done using FileProvider and selector, this is for multiple files

            Source https://stackoverflow.com/questions/67006600

            QUESTION

            Update events in calendar after change in variable - Fullcalendar
            Asked 2021-Mar-25 at 08:11

            Using Fullcalendar with Vue.js, I'm passing the initial events from a variable, but I need that after this variable is updated, the events were updated in the calendar also. The documentation seems to be clear about that:

            But I've tried this and nothing happens, the events keeps as the first renderization.
            Also I've looked in many SO related answers about this topic but most of them are applied with JQuery which is not my case.
            I can't figure out how to aply this in a correct way.
            Thanks in advance for your attention...

            My code to create the calendar:

            ...

            ANSWER

            Answered 2021-Mar-25 at 07:27

            Your events don't update because you're using a static event source - that array was copied to fullCalendar when it was initialised. Updates to it have no effect on the calendar because fullCalendar is using a different, older copy of the array.

            And fullCalendar has no way to refetch anything because you didn't give it a source to fetch from. If you want re-fetching to work then you need to provide a dynamic event source. There are two techniques you can use to do that, both described in detail in the documentation:

            1. Events as a JSON feed - where you simply specify a URL which will return JSON event data directly. fullCalendar will call this URL whenever the date changes - or whenever you call refetchEvents - and pass the current start and end dates of the calendar as query parameters, so the server can return a list of events correctly filtered by date.

            2. Events as a function - where you provide a callback function which fullCalendar will call whenever the date changes - or whenever you call refetchEvents - and passes the current start and end date as parameters to the function. The function can then do whatever you want in order to fetch events - e.g. make a custom AJAX call, or call another function or whatever. When the events are ready you pass them back to fullCalendar using the "successCallback" function supplied as a parameter to the main callback. There's an example in the documentation.

            Source https://stackoverflow.com/questions/66792785

            QUESTION

            ssl certificate issue for jgit in javafx app image versus javafx app runtime
            Asked 2020-Nov-12 at 15:37

            I have developed a simple JavaFX app using jgit, that is allowing users to play with git.

            When the app was started from the IntelliJ idea, I was able to clone the GitHub repo using my jgit implementation of the "git clone" command without any issues. But as soon as I created an image from my app and started the app from the image, I am getting an SSL certificate issue:

            Exception:org.eclipse.jgit.api.errors.TransportException: Secure connection to https://my-github-repo.git could not be established because of SSL problems.

            I am trying to understand why I am getting the SSL certificate issue only when I am running the app from the image. Can somebody explain that? I understand that I can disable SSL verification (there are some questions answered on that topic), but I want to know why it is working from IDE and not from the created image...

            here is my simplified git clone implementation for http:

            ...

            ANSWER

            Answered 2020-Nov-12 at 15:37

            The most likely situation is that you are missing a module in the JRE image related to crypto that is required to authenticate the SSL connection.

            What jdk.crypto.* modules are in the final image? Perhaps if one of these is missing it will affect the ability to handle the SSL certificates?

            • jdk.crypto.cryptoki
            • jdk.crypto.ec
            • jdk.crypto.mscapi

            Since some aspects of the security/crypto code are done via service providers, perhaps when you generate the JRE image you should pass the "--bind-services" option to "Link in service provider modules and their dependences"

            You will need to share more details about how the image is created and what specific errors are reported. Try to include the full stack trace of any reported exceptions.

            What version of Java 11 are you using? Could you be running into this: JDK 11 SSL Error on valid certificate (working in previous versions)

            (It is unlikely if you are running with the same JDK version in the IDE and the packaged image, but thought I would mention it just in case it gives you a hint.)

            Source https://stackoverflow.com/questions/64791882

            QUESTION

            I have doubts about double pointer as parameters for a swap function
            Asked 2020-May-14 at 00:29

            I hope you can help me! I added this function to my array.c to shuffle the array elements and it works with static Item *a; static int dim; in my array.c.

            ...

            ANSWER

            Answered 2020-May-14 at 00:29

            Ok, let's start from here:

            Source https://stackoverflow.com/questions/61785612

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install vcfpy

            You can install using 'pip install vcfpy' or download it from GitHub, PyPI.
            You can use vcfpy like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            Install
          • PyPI

            pip install vcfpy

          • CLONE
          • HTTPS

            https://github.com/bihealth/vcfpy.git

          • CLI

            gh repo clone bihealth/vcfpy

          • sshUrl

            git@github.com:bihealth/vcfpy.git

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