k-Medoid | medoids algorithm is one of the best-known clustering | Machine Learning library
kandi X-RAY | k-Medoid Summary
kandi X-RAY | k-Medoid Summary
The k-medoids algorithm is one of the best-known clustering algorithms. Despite this, however, it is not as widely used for big data analytics as the k-means algorithm, mainly because of its high computational complexity. Many studies have attempted to solve the efficiency problem of the k-medoids algorithm, but all such studies have improved efficiency at the expense of accuracy. In this paper, we propose a novel parallel k-medoids algorithm, which we call PAMAE, that achieves both high accuracy and high efficiency. We identify two factors—"global search" and "entire data"—that are essential to achieving high accuracy, but are also very time-consuming if considered simultaneously. Thus, our key idea is to apply them individually through two phases: parallel seeding and parallel refinement, neither of which is costly. The first phase performs global search over sampled data, and the second phase performs local search over entire data. Our theoretical analysis proves that this serial execution of the two phases leads to an accurate solution that would be achieved by global search over entire data. In order to validate the merit of our approach, we implement PAMAE on Spark as well as Hadoop and conduct extensive experiments using various real-world data sets on 12 Microsoft Azure machines (48 cores). The results show that PAMAE significantly outperforms most of recent parallel algorithms and, at the same time, produces a clustering quality as comparable as the previous most-accurate algorithm.
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- Processes the input .
- Refinement function refinement .
- step 1 .
- Normalized PAM .
- Initializes the output .
- Gets the GREEDI objects with the GREEDI objects for a data set of medoids
- map to k_Medoid
- pass the information to the output
- Checks if this point is the same .
- Estimates the costs of a data set .
k-Medoid Key Features
k-Medoid Examples and Code Snippets
Community Discussions
Trending Discussions on k-Medoid
QUESTION
Consider the following dash app which is used inside a flask app:
...ANSWER
Answered 2022-Apr-01 at 21:17I had to filter data before using it in callbacks. Now it looks like below:
QUESTION
I've a problem with the control of the pattern of two class labels (1 and 2) results in the classification task using k-medoids. I'd like to apply the cluster::clara
in two areas (ID
) g2
and g3
and the same classification label for both areas, in my example:
ANSWER
Answered 2021-Nov-30 at 13:23There is a trick to it! You need to start always with the higher or lower values of the data set, just only put and remove then after the classification and works very well, in this case using the lower value in the variable R
:
QUESTION
According to the Sklearn_extra documentation on KMedoids, KMedoids should have the following parameters: n_clusters
, metric
, method
, init
, max_iter
and random_state
. The method
parameter determines which algorithm to use: alternate
or pam
. According to sklearn_extra's user guide these methods are inherently different from each other. For my specific application I want to use the PAM version of K-medoids. However, the method
parameter seems to have disappeared. When I run an inspect on the KMedoids function:
ANSWER
Answered 2021-Feb-24 at 10:47The method
parameter is available in the the latest development version. So uninstall the existing version you have and install the latest directly from github using:
QUESTION
I have x and y arrays, x consists of three arrays and y consists of three arrays that consist of seven values
...ANSWER
Answered 2020-Aug-05 at 20:52Given arrays x
and y
as provided in question:
QUESTION
i'm trying to build k-medoids algorithm in python. i have difficulties in computing the cost. I'm using 3 cluster. For example i have S (the distance matrix for every point to each cluster).
...ANSWER
Answered 2020-Jun-01 at 13:53It is because i
takes value for each row, but not the required index within that row.
You should change your for
loop to:
QUESTION
I am reading data from a dataset containing points in a plane. Each point has x and y co-ordinate.
...ANSWER
Answered 2020-Feb-09 at 04:20You are trying to find the unique elements within the 2D list. You can modify your code a bit.
QUESTION
I'm following an excellent medium article: https://towardsdatascience.com/k-medoids-clustering-on-iris-data-set-1931bf781e05 to implement kmedoids from scratch. There is a place in the code where each pixel's distance to the medoid centers is calculated and it is VERY slow. It has numpy.linalg.norm inside a loop. Is there a way to optimize this with numpy.linalg.norm or with numpy broadcasting or scipy.spatial.distance.cdist and np.argmin to do the same thing?
...ANSWER
Answered 2020-Jan-13 at 17:05There's a good chance numpy's broadcasting capabilities will help. Getting broadcasting to work in 3+ dimensions is a bit tricky, and I usually have to resort to a bit of trial and error to get the details right.
The use of linalg.norm
here compounds things further, because my version of the code won't give identical results to linalg.norm
for all inputs. But I believe it will give identical results for all relevant inputs in this case.
I've added some comments to the code to explain the thinking behind certain details.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install k-Medoid
You can use k-Medoid like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the k-Medoid component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .
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