cellbase | Performance NoSQL database and RESTful web services | Database library

 by   opencb Java Version: 5.8.3 License: Apache-2.0

kandi X-RAY | cellbase Summary

kandi X-RAY | cellbase Summary

cellbase is a Java library typically used in Database, MongoDB applications. cellbase has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub, Maven.

High-Performance NoSQL database and RESTful web services to access to most relevant biological data
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              cellbase has a low active ecosystem.
              It has 76 star(s) with 52 fork(s). There are 27 watchers for this library.
              There were 5 major release(s) in the last 6 months.
              There are 143 open issues and 277 have been closed. On average issues are closed in 110 days. There are 16 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of cellbase is 5.8.3

            kandi-Quality Quality

              cellbase has 0 bugs and 0 code smells.

            kandi-Security Security

              cellbase has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              cellbase code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              cellbase is licensed under the Apache-2.0 License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              cellbase releases are available to install and integrate.
              Deployable package is available in Maven.
              Build file is available. You can build the component from source.
              It has 53060 lines of code, 3787 functions and 368 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed cellbase and discovered the below as its top functions. This is intended to give you an instant insight into cellbase implemented functionality, and help decide if they suit your requirements.
            • Parses the genome
            • Index miRNA base file
            • Index miR base
            • Returns the transcript
            • Parse data release options
            • Checks that the parameters are valid
            • Load data from a file
            • Fetches all pathways with the given subpath
            • Gets help page help
            • This method is used to solve the non - coding negation
            • Gets the consequence type
            • This method is used to solve the non - coding for the exon sequence
            • Parse regulation regions
            • The consequence type
            • Runs the consequence
            • Executes the validation command
            • Solves the CDS negation of the CDS
            • Parse UniProt data
            • This method is used to solve a coding negation
            • Parse the build command options
            • Parses the CADD file
            • Helper method to solve the non - coding negation
            • Solves the coding for a gene in a cell
            • The CN consequence type
            • This method finds the non - coding negation of the exon negation of the exons
            • Searches for a coding positive strand
            Get all kandi verified functions for this library.

            cellbase Key Features

            No Key Features are available at this moment for cellbase.

            cellbase Examples and Code Snippets

            No Code Snippets are available at this moment for cellbase.

            Community Discussions

            QUESTION

            QML module not recognized by IDE
            Asked 2021-Nov-26 at 21:52

            I'm having trouble importing my QML module into my main file so that Qt Design Studio would recognize it.

            I have the following folder structure:

            ...

            ANSWER

            Answered 2021-Nov-26 at 21:52

            Try setting QML_IMPORT_PATH as described here:

            https://doc.qt.io/qtcreator/creator-qml-modules-with-plugins.html#importing-qml-modules

            EDIT: You can also try selecting Tools -> QML/JS -> Reset Code Model. It sometimes doesn't automatically update.

            Source https://stackoverflow.com/questions/70113160

            QUESTION

            XmlValueDisconnectedException when remove Formula
            Asked 2021-Apr-14 at 11:12

            I trying to reade an Excel file with java poi. I iterate through the rows and then through the cells. To reade the cell i use this method:

            ...

            ANSWER

            Answered 2021-Apr-14 at 11:12

            According the StackTrace, there is a problem with a shared formula.

            If you have formulas =D6, =D7, =D8, ... =D219, =D220, ... and so on in column D, then not for all cells the complete formula is stored. Instead only one cell stores the complete formula and following cells only store shared reference to the formula.

            In OOXML this looks like so :

            In XML of cell D8: D7

            In XML of cell D9:D300:

            This Excel behavior tends to be fragile if somewhat else than Excel manipulates rows containing such shared formulas.

            Cell.removeFormula is a pretty new feature in apache poi. It might be buggy. But as it is designed it should know about such shared formulas and respect those. So to get what really leads to that XmlValueDisconnectedException one would need the Excel file. There one could have a look into the sheet's XML and check whether someting in the shared formula's XML is different from the default which is expected by XSSFCell.convertSharedFormula.

            But do you really need Cell.removeFormula? Because if the goal is simply to get the cashed formula value instead of the formula string itself but to avoid evaluating, then one could get that cashed formula value the same way as the other cell values but dependent on the cached formula result type.

            Example:

            Source https://stackoverflow.com/questions/67088842

            QUESTION

            Swift: UITableView row items not hiding when hide that row
            Asked 2020-Mar-21 at 13:32

            I have a table view class and three cell classes which I am using to populate 3 rows of table view.screenshot of my table view

            I want to hide 2nd row whenever toggle button is off. when I tap on the toggle button the row gets collapsed but the cell item does not hide.scrrenshot after tapping toggle button

            here is my code:

            ...

            ANSWER

            Answered 2020-Mar-21 at 13:32

            The cell's contents are showing because you made the row-height 0... but this approach for showing/hiding a row (and the way you have setup your views) doesn't change the content of that cell.

            So, the content is still showing because it is extending below the bounds of the cell.

            There are other (arguably better) ways of showing/hiding rows, but sticking with your approach...

            Change your setupViews() func in class CellBase to:

            Source https://stackoverflow.com/questions/60777861

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install cellbase

            You can download it from GitHub, Maven.
            You can use cellbase like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the cellbase component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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          • HTTPS

            https://github.com/opencb/cellbase.git

          • CLI

            gh repo clone opencb/cellbase

          • sshUrl

            git@github.com:opencb/cellbase.git

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