SETH | SNP Extraction Tool for Human Variations | Topic Modeling library

 by   rockt Java Version: 1.4.0 License: Non-SPDX

kandi X-RAY | SETH Summary

kandi X-RAY | SETH Summary

SETH is a Java library typically used in Artificial Intelligence, Topic Modeling applications. SETH has no bugs, it has no vulnerabilities, it has build file available and it has low support. However SETH has a Non-SPDX License. You can download it from GitHub.

SNP Extraction Tool for Human Variations

            kandi-support Support

              SETH has a low active ecosystem.
              It has 26 star(s) with 13 fork(s). There are 8 watchers for this library.
              There were 1 major release(s) in the last 12 months.
              There are 14 open issues and 16 have been closed. On average issues are closed in 155 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of SETH is 1.4.0

            kandi-Quality Quality

              SETH has 0 bugs and 0 code smells.

            kandi-Security Security

              SETH has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              SETH code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              SETH has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              SETH releases are available to install and integrate.
              Build file is available. You can build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed SETH and discovered the below as its top functions. This is intended to give you an instant insight into SETH implemented functionality, and help decide if they suit your requirements.
            • Main entry point for rotation
            • Retrieves the dbSN associated with a given gene ID
            • Returns a list of uniprot features for a given entity ID
            • Connects to database
            • Entry point to the database
            • Format duration in human readable format
            • Close the ResultSet
            • Main method for testing
            • Reads the mutations from an annotated corpus
            • Main method to be used to generate a CSV file
            • Example of the execution of the MutationFinder
            • Demonstrates how to perform the SMTP
            • This method is used to determine if the SNP sequences have been normalized
            • Generate a human readable representation of the mutation mention
            • Reads chromosome regions and gene IDs from the file
            • Checks if the given Mutation mention matches
            • Main method for testing
            • SQLite database
            • Main entry point
            • Main function for testing
            • Main entry point for testing
            • Command - line utility
            • End element
            • The main method to write the SETH file to a file
            • Initialize ambiguous mentions
            • Takes a file and prints a SETH file
            Get all kandi verified functions for this library.

            SETH Key Features

            No Key Features are available at this moment for SETH.

            SETH Examples and Code Snippets

            No Code Snippets are available at this moment for SETH.

            Community Discussions


            Get data from pandas on specifics string
            Asked 2022-Apr-16 at 02:48

            So here is my code.



            Answered 2022-Apr-16 at 02:48
            import pandas as pd
            data = pd.read_csv('cast.csv')
            data_2 = data[data['type'] == 'actor']
            output = data_2[data['name'].str.startswith('Aaron')]



            Javascript simple if/else statement Quiz Game with 5 questions that outputs results at the end
            Asked 2022-Mar-21 at 23:00

            Anyone care to help me get this code running correctly? Just simple if/else statements Javascript. I have tried attaching a "do {" before each of the next questions, but I couldn't get that to work. It keeps saying that "Uncaught SyntaxError: Unexpected end of input".



            Answered 2022-Mar-21 at 23:00

            Your do statement is incorrect. It needs the while keyword at the end.

            So, you can change your code to the template below to get it working.



            Goto function isn't working in rawturtle with mixed turtle and tkinter
            Asked 2022-Feb-26 at 16:47

            I am trying to make tic tac toe project in mixed turtle and tkinter and it is going very well by now, I have a bug now. I made 9 buttons for every field with coordinates, but whenever I click any button it goes to the first written position.



            Answered 2022-Feb-26 at 16:47

            You have problem because all Buttons run the same callback_and_hide but every Button should run diferent function callback_and_hide2, callback_and_hide3 , etc. That's all.



            Only one of two numeric columns is displaying in ggplot2 bar chart using R
            Asked 2022-Feb-20 at 15:25

            I have a dataset with three columns. One is Player; the second is Run_Value; the third is Num_years. I want Player to appear on the Y axis, Run_Value as a bar on the X axis, and Num_Years to appear either as a smaller bar within the Run_Value bar or next to it. Below is how my bar chart is currently appearing. The Num_Years data is not displaying, which is what I need.

            In addition, if at the end of each Run_Value bar its Run_Value could appear, that would be great.

            I have searched Stackoverflow for a comparable question, but could not find one. If one exists, please share it link.

            --I cannot see the two uploaded images on my screen and am not sure why.

            Dplyr Code:



            Answered 2022-Feb-18 at 02:37

            You may want to avoid having two x-axis. Consider the alternative of using facet_wrap. Note you first need to put your data into a long format. I've used df for your dataset.



            How do I create combinations from CSV in python?
            Asked 2022-Feb-20 at 05:33

            I have a python script that imports a CSV file to a dictionary like so:



            Answered 2022-Feb-20 at 05:33

            Here is code to iteratively do what you have asked. It uses a depth-first search (DFS) approach to traverse the input data and compile a list of all possible five-person groups meeting the selection criteria.

            Someone with no programming experience would be hard-pressed to come up with this on their own. Alternative implementations using recursion instead of an explicit stack variable may also be out of reach for a beginning programmer. Nevertheless, hopefully this answer gives you a sense of how to approach problems like this.



            How to force update single component react native
            Asked 2022-Jan-31 at 21:17

            I'm using 2 usestate in my component



            Answered 2022-Jan-31 at 21:17

            I guess the problem is that you try to access h directly instead of using setH.

            This should work:



            Javascript Plotly styling font and font colour
            Asked 2022-Jan-27 at 13:58



            Answered 2022-Jan-27 at 13:58

            You can use the insidetextfont property of the sunburst Trace :



            Using a for loop to create a new column in pandas dataframe
            Asked 2022-Jan-20 at 16:40

            I have been trying to create a web crawler to scrape data from a website called Baseball Reference. When defining my crawler I realized that the different players have a unique id at the end of their URL containing the first 6 letters of their last name, three zeroes and the first 3 letters of their first name.

            I have a pandas dataframe already containing columns 'first' and 'last' containing each players first and last names along with a lot of other data that i downloaded from this same website.

            my def for my crawler function is as follows so far:



            Answered 2022-Jan-20 at 16:40

            As stated in the comments, I wouldn't try to create a function to make the ids, as there will likely be some "quirky" ones in there that might not follow that logic.

            If you're just go through each letter search they have it divided by and get the id directly by the player url.



            How to find parent's youngest child's name
            Asked 2022-Jan-17 at 11:15

            I have a people table shown below.



            Answered 2022-Jan-17 at 11:15

            You can use ROW_NUMBER() function to number records.

            This numbering is based on motherId,fatherId which is sorted by age column.

            After that, you can extract the numbers 1 of each family.

            Use this:



            python plotly dash treemap get selected child label
            Asked 2022-Jan-15 at 07:17

            I'm trying to use a plotly treemap within dash. When the user selects a subgroup in the treemap by clicking on it, the treemap zooms in on the selected section. Is there a way for me to get the user's selection and use that as an input into a Dash callback?

            For example, here is code for a treemap in Dash:



            Answered 2022-Jan-15 at 07:17

            You could use the dcc.Graph's clickData property in your callback

            clickData (dict; optional): Data from latest click event. Read-only.


            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install SETH

            You can download it from GitHub.
            You can use SETH like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the SETH component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer For Gradle installation, please refer .


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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