gnw | intuitive Java application developed for the generation | Machine Learning library

by tschaffter Java Version: 3.1 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(6)Vulnerabilities Install Support

kandi X-RAY | gnw Summary

gnw is a Java library typically used in Artificial Intelligence, Machine Learning applications. gnw has no bugs, it has no vulnerabilities and it has low support. However gnw build file is not available and it has a Non-SPDX License. You can download it from GitHub.

numerous methods have been developed for reverse engineering gene regulatory networks from expression data. unraveling and modeling these networks is of primary importance for improving our understanding of biological organisms. however, both their absolute and comparative performance remain poorly understood. the aim of this project is to provide benchmarks and tools for rigorous testing of methods for gene network inference. our framework is available as an open-source and intuitive java software called genenetweaver (gnw). gnw is the first tool that provides methods for both in silico benchmark generation and performance profiling of network inference algorithms. gnw has been developed to easily generate detailed models of gene regulatory networks. one of the main advantages of using in silico is that perturbation experiments can be

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gnw has a low active ecosystem.

It has 10 star(s) with 5 fork(s). There are 4 watchers for this library.

It had no major release in the last 12 months.

There are 0 open issues and 7 have been closed. On average issues are closed in 903 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of gnw is 3.1

Quality

gnw has 0 bugs and 0 code smells.

Security

gnw has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

gnw code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

gnw has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

gnw releases are available to install and integrate.

gnw has no build file. You will be need to create the build yourself to build the component from source.

gnw saves you 74741 person hours of effort in developing the same functionality from scratch.

It has 83267 lines of code, 1595 functions and 168 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed gnw and discovered the below as its top functions. This is intended to give you an instant insight into gnw implemented functionality, and help decide if they suit your requirements.

Initialize the frame
Checks if the user can use the default mail client
Open the default mail client
Checks if the default browser can be used
Initialize the UI
Load a gene network from a file
This method counts the number of motifs
Recursively unzip a file
Computes the production rate of a gene
Returns the expression matrix as a String array
Saves the model to a file
Get the expression matrix to be formatted as a String array
Computes the drift coefficients for the trajectory
Initialization for stochastic simulation
Set the parameters to be tested
Save motifs definition to file
Invoked when an item is released
Initialize the motif ids
Initialize the rank of the graph
Initialize the resources
Run the simulation
This method initializes the regulation functions
Save the motif scores
Generate the parameters
Set the actions
Add tooltips to the window

Get all kandi verified functions for this library.

gnw Key Features

No Key Features are available at this moment for gnw.

gnw Examples and Code Snippets

No Code Snippets are available at this moment for gnw.

Community Discussions

Trending Discussions on gnw

Running 1000 functions gracefully using python multi-processing

Joining xts objects using try fails in R

Sorting Plotly bar chart data overlaid on candlestick chart

Solve One Equation Multiple times

VBA - Data Counting

MySql StoredProcedure with inner join

QUESTION

Running 1000 functions gracefully using python multi-processing

Asked 2021-Feb-01 at 15:16

I'm trying to receive stock data for about 1000 stocks, to speed up the process I'm using multiprocessing, unfortunately due to the large amount of stock data I'm trying to receive python as a whole just crashes.

Is there a way to use multiprocessing without python crashing, I understand it would still take some time to do all of the 1000 stocks, but all I need is to do this process as fast as possible.

...

ANSWER

Answered 2021-Jan-31 at 19:18

Ok, here is one way to obtain what you want in about 2min. Some tickers are bad, that's why it crashes.

Here's the code. I use joblib for threading or multiprocess since it doesn't work in my env. But, that's the spirit.

Source https://stackoverflow.com/questions/65980910

QUESTION

Joining xts objects using try fails in R

Asked 2019-Apr-18 at 22:19

My aim is to download stock prices using the quantmod library for a large number of ticker symbols (~700) and merge the results in a single dataframe which I will save as a csv file. I have a list of ticker symbols but not all of them are downloadable by quantmod.

So when I pass the list with the ticker symbols to the getSymbols() method, once it encounters a problem with a particular ticker symbol it stops and returns an exception. I am trying to circumvent this behavior with a for loop and the try method, but I fail.

Let's look at some code:

When I try to download two ticker symbols that are downloadable and then merge them into one xts object I succeed:

...

ANSWER

Answered 2019-Apr-18 at 08:59

Here is a code I tried. It seems working (although I tried only a subset of the vector):

Source https://stackoverflow.com/questions/55740392

QUESTION

Sorting Plotly bar chart data overlaid on candlestick chart

Asked 2019-Jan-09 at 16:49

I am overlaying a barchart on a candlestick plot, all data is referenced from the same data frame. I want to sort the data ascending from the bar chart data but cannot find any guide to help with an overlay. Has anyone gotten this to work? I've attached the current output but want the grey bars sorted.

...

ANSWER

Answered 2019-Jan-09 at 16:49

The order of the categories on the x-axis can be controlled using categoryorder as follows:

Source https://stackoverflow.com/questions/54099819

QUESTION

Solve One Equation Multiple times

Asked 2017-Aug-11 at 19:05

I have 50 observations as rows and columns with variable values. For each observation, I use fsolve to solve for the unknown variable q_iz. I'm trying to use LOOP. I have solved it for 1^st row but MATLAB throws an error when it is going to 2^nd row. Also, I want to store the solved value of k in (50,1) dimension.

I'm presenting a simpler code to represent the problem as follows:

...

ANSWER

Answered 2017-Aug-11 at 19:05

You have passed a scalar k0(c,1) to your function qiz. In that function you try to access k(c,1) and get the error stating as much.

FZERO cannot continue because user supplied function_handle ==> qiz failed with the error below. Attempted to access k(2,1); index out of bounds because numel(k)=1.

The error is telling you that k is a scalar with numel(k)=1. That is the first error. The second is that within the function qiz you are reassigning the value of c. You defined c as global and then use it as the index in the second loop. When qiz ends the value for c is now 51. That is out of bounds for the k0 vector. Try to always use variable names that mean something to avoid this error.

Here is a working (error free) version.

Source https://stackoverflow.com/questions/45638880

QUESTION

VBA - Data Counting

Asked 2017-Jul-13 at 07:35

With ActiveSheet
lastrow = .Cells(.Rows.Count, "A").End(xlUp).Row
MsgBox lastrow
End With

...

ANSWER

Answered 2017-Jul-13 at 07:33

I don't know if this satisfies you:

Source https://stackoverflow.com/questions/45074102

QUESTION

MySql StoredProcedure with inner join

Asked 2017-Feb-15 at 06:51

I have a table named region having two columns : having region_id is primary key

...

ANSWER

Answered 2017-Feb-15 at 05:55

you missed group by in your syntax

Source https://stackoverflow.com/questions/42241644

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install gnw

You can download it from GitHub.
You can use gnw like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the gnw component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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