ytk-mp4j | thread collective message passing java library | Machine Learning library

 by   yuantiku Java Version: 0.0.1 License: MIT

kandi X-RAY | ytk-mp4j Summary

kandi X-RAY | ytk-mp4j Summary

ytk-mp4j is a Java library typically used in Artificial Intelligence, Machine Learning, Deep Learning, Pytorch applications. ytk-mp4j has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub, Maven.

Ytk-mp4j is a fast, user-friendly, cross-platform, multi-process, multi-thread collective message passing java library for distributed machine learning. It's similar to MPI but it has several important features:.
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            kandi-support Support

              ytk-mp4j has a low active ecosystem.
              It has 103 star(s) with 28 fork(s). There are 14 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              ytk-mp4j has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of ytk-mp4j is 0.0.1

            kandi-Quality Quality

              ytk-mp4j has 0 bugs and 0 code smells.

            kandi-Security Security

              ytk-mp4j has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              ytk-mp4j code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              ytk-mp4j is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              ytk-mp4j releases are not available. You will need to build from source code and install.
              Deployable package is available in Maven.
              Build file is available. You can build the component from source.
              Installation instructions are not available. Examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi has reviewed ytk-mp4j and discovered the below as its top functions. This is intended to give you an instant insight into ytk-mp4j implemented functionality, and help decide if they suit your requirements.
            • Broadcasts an object array
            • Broadcasts a single value to another process
            • Create a new send packet
            • Binary - tree scatter
            • Write the data to the commas
            • Gather elements from all threads and threads
            • Package - private for testing
            • This method initializes the data structures
            • Gather elements from all threads and threads
            • Package - private for testing
            • This method initializes commas
            • Gather elements from all threads and threads
            • Package - private for testing
            • Creates the commather data
            • Gather elements from all threads and threads
            • Package - private for testing
            • Initialize the commather
            • Gather elements from all threads and threads
            • Package - private for testing
            • Write the commas
            • Gather elements from all threads and threads
            • Package - private for testing
            • Write byte array
            • Broadcasts a single value to another process
            • Create a new send packet
            • Binary - tree scatter
            • Check the slave
            • Broadcasts a single value to another process
            • Create a new send packet
            • Binary - tree scatter
            • Write long array
            • Broadcasts a single value to another process
            • Create a new send packet
            • Binary - tree scatter
            • Check the slave data
            • Broadcasts a single value to another process
            • Create a new send packet
            • Binary - tree scatter
            • Writes the string array
            • Broadcasts a single value to another process
            • Create a new send packet
            • Binary - tree scatter
            • This method initializes the commather data
            • Gather elements from all threads and threads
            • Package - private for testing
            • Gathers the data from the slave
            • Gather data from the slave
            • Generate a float array
            • Generate double array
            • Write the status of the slave
            • Broadcasts a map in the root thread
            • Broadcast array data
            • Broadcast a single value
            • Write short array
            • Broadcasts a map in the root thread
            • Broadcast array data
            • Broadcast a single value
            • Gets the object nodes
            • Check for the threads
            • Broadcasts a map in the root thread
            • Broadcast array data
            • Broadcast a single value
            • Gets the slave array
            • Write the thread data
            • Broadcasts a map in the root thread
            • Broadcast array data
            • Broadcast a single value
            • Prepare the comms
            • Private helper
            • Helper method to send data chunks
            • Send a batch of data
            • Create and scatter rows
            • Private helper
            • Helper method to send data chunks
            • Send a batch of data
            • Create and scatter threads
            • Private helper
            • Helper method to send data chunks
            • Send a batch of data
            • Create and scatter the data
            • Private helper
            • Helper method to send data chunks
            • Send a batch of data
            • Create and scatter the threads
            • Private helper
            • Helper method to send data chunks
            • Send a batch of data
            • This method is used to gather data from the slave
            • Gets the byte array
            • Write the array of threads
            • Broadcasts a map in the root thread
            • Broadcast array data
            • Broadcast a single value
            Get all kandi verified functions for this library.

            ytk-mp4j Key Features

            No Key Features are available at this moment for ytk-mp4j.

            ytk-mp4j Examples and Code Snippets

            No Code Snippets are available at this moment for ytk-mp4j.

            Community Discussions

            QUESTION

            Using RNN Trained Model without pytorch installed
            Asked 2022-Feb-28 at 20:17

            I have trained an RNN model with pytorch. I need to use the model for prediction in an environment where I'm unable to install pytorch because of some strange dependency issue with glibc. However, I can install numpy and scipy and other libraries. So, I want to use the trained model, with the network definition, without pytorch.

            I have the weights of the model as I save the model with its state dict and weights in the standard way, but I can also save it using just json/pickle files or similar.

            I also have the network definition, which depends on pytorch in a number of ways. This is my RNN network definition.

            ...

            ANSWER

            Answered 2022-Feb-17 at 10:47

            You should try to export the model using torch.onnx. The page gives you an example that you can start with.

            An alternative is to use TorchScript, but that requires torch libraries.

            Both of these can be run without python. You can load torchscript in a C++ application https://pytorch.org/tutorials/advanced/cpp_export.html

            ONNX is much more portable and you can use in languages such as C#, Java, or Javascript https://onnxruntime.ai/ (even on the browser)

            A running example

            Just modifying a little your example to go over the errors I found

            Notice that via tracing any if/elif/else, for, while will be unrolled

            Source https://stackoverflow.com/questions/71146140

            QUESTION

            Flux.jl : Customizing optimizer
            Asked 2022-Jan-25 at 07:58

            I'm trying to implement a gradient-free optimizer function to train convolutional neural networks with Julia using Flux.jl. The reference paper is this: https://arxiv.org/abs/2005.05955. This paper proposes RSO, a gradient-free optimization algorithm updates single weight at a time on a sampling bases. The pseudocode of this algorithm is depicted in the picture below.

            optimizer_pseudocode

            I'm using MNIST dataset.

            ...

            ANSWER

            Answered 2022-Jan-14 at 23:47

            Based on the paper you shared, it looks like you need to change the weight arrays per each output neuron per each layer. Unfortunately, this means that the implementation of your optimization routine is going to depend on the layer type, since an "output neuron" for a convolution layer is quite different than a fully-connected layer. In other words, just looping over Flux.params(model) is not going to be sufficient, since this is just a set of all the weight arrays in the model and each weight array is treated differently depending on which layer it comes from.

            Fortunately, Julia's multiple dispatch does make this easier to write if you use separate functions instead of a giant loop. I'll summarize the algorithm using the pseudo-code below:

            Source https://stackoverflow.com/questions/70641453

            QUESTION

            How can I check a confusion_matrix after fine-tuning with custom datasets?
            Asked 2021-Nov-24 at 13:26

            This question is the same with How can I check a confusion_matrix after fine-tuning with custom datasets?, on Data Science Stack Exchange.

            Background

            I would like to check a confusion_matrix, including precision, recall, and f1-score like below after fine-tuning with custom datasets.

            Fine tuning process and the task are Sequence Classification with IMDb Reviews on the Fine-tuning with custom datasets tutorial on Hugging face.

            After finishing the fine-tune with Trainer, how can I check a confusion_matrix in this case?

            An image of confusion_matrix, including precision, recall, and f1-score original site: just for example output image

            ...

            ANSWER

            Answered 2021-Nov-24 at 13:26

            What you could do in this situation is to iterate on the validation set(or on the test set for that matter) and manually create a list of y_true and y_pred.

            Source https://stackoverflow.com/questions/68691450

            QUESTION

            CUDA OOM - But the numbers don't add upp?
            Asked 2021-Nov-23 at 06:13

            I am trying to train a model using PyTorch. When beginning model training I get the following error message:

            RuntimeError: CUDA out of memory. Tried to allocate 5.37 GiB (GPU 0; 7.79 GiB total capacity; 742.54 MiB already allocated; 5.13 GiB free; 792.00 MiB reserved in total by PyTorch)

            I am wondering why this error is occurring. From the way I see it, I have 7.79 GiB total capacity. The numbers it is stating (742 MiB + 5.13 GiB + 792 MiB) do not add up to be greater than 7.79 GiB. When I check nvidia-smi I see these processes running

            ...

            ANSWER

            Answered 2021-Nov-23 at 06:13

            This is more of a comment, but worth pointing out.

            The reason in general is indeed what talonmies commented, but you are summing up the numbers incorrectly. Let's see what happens when tensors are moved to GPU (I tried this on my PC with RTX2060 with 5.8G usable GPU memory in total):

            Let's run the following python commands interactively:

            Source https://stackoverflow.com/questions/70074789

            QUESTION

            How to compare baseline and GridSearchCV results fair?
            Asked 2021-Nov-04 at 21:17

            I am a bit confusing with comparing best GridSearchCV model and baseline.
            For example, we have classification problem.
            As a baseline, we'll fit a model with default settings (let it be logistic regression):

            ...

            ANSWER

            Answered 2021-Nov-04 at 21:17

            No, they aren't comparable.

            Your baseline model used X_train to fit the model. Then you're using the fitted model to score the X_train sample. This is like cheating because the model is going to already perform the best since you're evaluating it based on data that it has already seen.

            The grid searched model is at a disadvantage because:

            1. It's working with less data since you have split the X_train sample.
            2. Compound that with the fact that it's getting trained with even less data due to the 5 folds (it's training with only 4/5 of X_val per fold).

            So your score for the grid search is going to be worse than your baseline.

            Now you might ask, "so what's the point of best_model.best_score_? Well, that score is used to compare all the models used when searching for the optimal hyperparameters in your search space, but in no way should be used to compare against a model that was trained outside of the grid search context.

            So how should one go about conducting a fair comparison?

            1. Split your training data for both models.

            Source https://stackoverflow.com/questions/69844028

            QUESTION

            Getting Error 524 while running jupyter lab in google cloud platform
            Asked 2021-Oct-15 at 02:14

            I am not able to access jupyter lab created on google cloud

            I created one notebook using Google AI platform. I was able to start it and work but suddenly it stopped and I am not able to start it now. I tried building and restarting the jupyterlab, but of no use. I have checked my disk usages as well, which is only 12%.

            I tried the diagnostic tool, which gave the following result:

            but didn't fix it.

            Thanks in advance.

            ...

            ANSWER

            Answered 2021-Aug-20 at 14:00

            QUESTION

            TypeError: brain.NeuralNetwork is not a constructor
            Asked 2021-Sep-29 at 22:47

            I am new to Machine Learning.

            Having followed the steps in this simple Maching Learning using the Brain.js library, it beats my understanding why I keep getting the error message below:

            I have double-checked my code multiple times. This is particularly frustrating as this is the very first exercise!

            Kindly point out what I am missing here!

            Find below my code:

            ...

            ANSWER

            Answered 2021-Sep-29 at 22:47

            Turns out its just documented incorrectly.

            In reality the export from brain.js is this:

            Source https://stackoverflow.com/questions/69348213

            QUESTION

            Ordinal Encoding or One-Hot-Encoding
            Asked 2021-Sep-04 at 06:43

            IF we are not sure about the nature of categorical features like whether they are nominal or ordinal, which encoding should we use? Ordinal-Encoding or One-Hot-Encoding? Is there a clearly defined rule on this topic?

            I see a lot of people using Ordinal-Encoding on Categorical Data that doesn't have a Direction. Suppose a frequency table:

            ...

            ANSWER

            Answered 2021-Sep-04 at 06:43

            You're right. Just one thing to consider for choosing OrdinalEncoder or OneHotEncoder is that does the order of data matter?

            Most ML algorithms will assume that two nearby values are more similar than two distant values. This may be fine in some cases e.g., for ordered categories such as:

            • quality = ["bad", "average", "good", "excellent"] or
            • shirt_size = ["large", "medium", "small"]

            but it is obviously not the case for the:

            • color = ["white","orange","black","green"]

            column (except for the cases you need to consider a spectrum, say from white to black. Note that in this case, white category should be encoded as 0 and black should be encoded as the highest number in your categories), or if you have some cases for example, say, categories 0 and 4 may be more similar than categories 0 and 1. To fix this issue, a common solution is to create one binary attribute per category (One-Hot encoding)

            Source https://stackoverflow.com/questions/69052776

            QUESTION

            How to increase dimension-vector size of BERT sentence-transformers embedding
            Asked 2021-Aug-15 at 13:35

            I am using sentence-transformers for semantic search but sometimes it does not understand the contextual meaning and returns wrong result eg. BERT problem with context/semantic search in italian language

            by default the vector side of embedding of the sentence is 78 columns, so how do I increase that dimension so that it can understand the contextual meaning in deep.

            code:

            ...

            ANSWER

            Answered 2021-Aug-10 at 07:39

            Increasing the dimension of a trained model is not possible (without many difficulties and re-training the model). The model you are using was pre-trained with dimension 768, i.e., all weight matrices of the model have a corresponding number of trained parameters. Increasing the dimensionality would mean adding parameters which however need to be learned.

            Also, the dimension of the model does not reflect the amount of semantic or context information in the sentence representation. The choice of the model dimension reflects more a trade-off between model capacity, the amount of training data, and reasonable inference speed.

            If the model that you are using does not provide representation that is semantically rich enough, you might want to search for better models, such as RoBERTa or T5.

            Source https://stackoverflow.com/questions/68686272

            QUESTION

            How to identify what features affect predictions result?
            Asked 2021-Aug-11 at 15:55

            I have a table with features that were used to build some model to predict whether user will buy a new insurance or not. In the same table I have probability of belonging to the class 1 (will buy) and class 0 (will not buy) predicted by this model. I don't know what kind of algorithm was used to build this model. I only have its predicted probabilities.

            Question: how to identify what features affect these prediction results? Do I need to build correlation matrix or conduct any tests?

            Table example:

            ...

            ANSWER

            Answered 2021-Aug-11 at 15:55

            You could build a model like this.

            x = features you have. y = true_lable

            from that you can extract features importance. also, if you want to go the extra mile,you can do Bootstrapping, so that the features importance would be more stable (statistical).

            Source https://stackoverflow.com/questions/68744565

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install ytk-mp4j

            You can download it from GitHub, Maven.
            You can use ytk-mp4j like any standard Java library. Please include the the jar files in your classpath. You can also use any IDE and you can run and debug the ytk-mp4j component as you would do with any other Java program. Best practice is to use a build tool that supports dependency management such as Maven or Gradle. For Maven installation, please refer maven.apache.org. For Gradle installation, please refer gradle.org .

            Support

            Collective communication is a method of communication which involves participation of all processes(all threads). Ytk-mp4j doesn't contain point-to-point communication(using collective comunication can realize it, but it is not recommended). A communication operation in ytk-mp4j usually contains an Operand. In reduction operation, it also contains a Operator. Each process will be assigned a special number—rank which is encoded with lexicographical order of hostname from 0 to slaveNum - 1. Use getRank() to get rank. Use getSlaveNum() to get the total number of processes. Ytk-mp4j provides 8 predefined Operands, which almost meets all your needs. If you want to define a new Operand, you can extend Operand abstract class. compress is to decide whether the communication uses compression(default is false). To create a ObjectOperand, you must provide a serializer of Kryo and class type for your object. Kryo is a fast and efficient object graph serialization framework for java. ytk-learn uses Kryo to serialize and compress objects. More details about predefined Operands see Operands. Using KryoUtils.getDefaultSerializer(Class type) function, you can get serializer easily for most simple objects. Different Operands support different Operators. Ytk-mp4j provides some predefined reduction operations. The reduction operations should be commutative and associative. You can implement interface of different operands to get custom reduction operation.More details about predefined Operands see Operators. Set union, intersection and List concat(partial) are commutative and associative. Those operations are often used. More details see ThreadCommSlave, ProcessCommSlave. gather: Before the gather, each process node owns a piece of the data. After the gather, root process owns the entire data. allgather: Before the allgather, each process node owns a piece of the data. After the allgather, all processes own all of the data. broadcast: Before the broadcast, only root process owns entire data. After the broadcast, all processes own all of the data. scatter: Before the scatter, only root process owns entire data. After scatter, each process owns a piece of the data. reduce: Before the reduce, each process owns the data x(i). After the reduce, only root process owns the data of (x(0) + x(1) + … + x(p-1)). "+" is a general reduction operation. allreduce: Identical to the reduce, except all the processes own the data of reduced. reducescatter: Identical to the reduce, except each process owns a piece of reduced result. When the array size for allreduce is very small, using the allreduce algorithm in [1,2] may be not efficient, because most of time spend in network connection, so rpc-based allreduce is better for this situation. More details of collective operations, see ThreadCommSlave, ProcessCommSlave. Ytk-mp4j supports not only array data container in which data are arranged in different processes/threads in order, but also supports map data container which is more powerful and flexible. But it is not efficient, and the order of data in map data container will not be emphasized. In ThreadCommSlave, all threads in the same process shared the same result(reduce memory use and gc) when using map container, and if you want to modify in different threads, you must clone a duplicate ahead of modification. Master can receive information from slaves then print them out. Ytk-mp4j provides 4 different information-sending interfaces: info, debug, error, exception. More details see ThreadCommSlave, ProcessCommSlave. ProcessCommSlave provides barrier interface to synchronize all processes. Likewise, ThreadCommSlave also provides barrier interface to synchronize all processes and all threads, and provides threadBarrier interface to synchronize all threads in special process. In the package com.fenbi.mp4j.check, almost all interfaces have a detailed use case. The bin/comm_cluster_error_check.sh is an integrated test script, and you can use it to test all interfaces.
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