gorilla-repl | A rich REPL for Clojure in the notebook style | Code Editor library

Gorilla is typically run via the lein-gorilla plugin and thus isn't a part of an uberjar. If you really want to create a bundle containing gorilla repl dependencies, then you need to add it this capability manually to your project.

The question is why would you want to do that. Do you want to distribute these samples to somebody else? If that's the case, you'll still need to have all those worksheets in the current directory from where your uberjar is run because that's how gorilla repl discovers worksheets.

You can look at lein-gorilla source code to see how gorilla repl can be started. I'd then at the same code to your project (create new src/core.clj file or whatever) and configure it in your project.clj as :main. You'll also need to add gorilla-repl as a dependency to your project.clj

Notice however, that you'll need to run that uberjar from a directory where your anglican worksheets are (or a parent directory of such a directory).

Another option is to add [javax.xml.bind/jaxb-api "2.3.0"] as a dependency. However, similar to the :jvm-opts the dependencies don't apply to plugins (like lein-gorilla) since they are run separately.

You can either modify the original plugin and add jaxb-api to its dependencies (which I did in this PR: https://github.com/JonyEpsilon/lein-gorilla/pull/12) or you can "fake it" by adding jaxb-api to the :plugins vector in your project.clj: