mersenne-twister | Mersenne Twister pseudorandom number generator | Generator Utils library
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Mersenne Twister pseudorandom number generator
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QUESTION
I'm doing a simulation that is repeating some independent calculation for number of samples. I want to make this parallel to speed this up. In each sample I'm generating some random numbers (using rnorm). I read (and seen) that doParallel numbers are not repeatable so I wanted to use doRNG (which in fact generates the same random numbers independently on number of cores. However what I was surprised with doRNG generates different numbers than sequential for-loop, even when I don't register parallel backend so calculation is done sequentially (when using %dorng% operator I get the same results as with parallel backend registered), however I get the same numbers with %dopar% with no parallel backend registered. Why is that? Can I somehow parametrize foreach/doRNG to get the same random numbers as in sequential for-loop? I wanted to use this as a check that I didn't mess anything up while moving to parallel.
Below is a simplified example (notice that I do not register parallel backend):
...ANSWER
Answered 2022-Mar-04 at 16:22Ok, I finally found the reason (the comment I made a moment ago help). What is %dorng% doing it is generating random seed for each value i in foreach. Due to that to get the same numbers as in %dorng% using for loop we need to first use L'Ecuyer-CMRG PRNG and we need to set the same number of seeds. In that case code that would replicate that in for-loop is:
QUESTION
I am trying to update Rcpp from 1.0.6 to 1.0.7 or 1.0.8. The Rcpp update is essential for a primary R library that I intend to use.
I looked at the documentation and tried to install Rcpp using:
...ANSWER
Answered 2022-Feb-04 at 19:02So you are using Seurat
. That is a big package with many recursive dependencies:
QUESTION
I'm following Jan Kirenz tutorial for classification using Tidymodels. Everything so far has gone well until I try to evaluate the model using the function fit_resamples()
. I keep getting the error message Error in UseMethod("required_pkgs") : no applicable method for 'required_pkgs' applied to an object of class "workflow"
.
The code he uses in that section is:
...ANSWER
Answered 2021-Sep-07 at 22:33the second chunk in your question works fine when I attach the package named tune
. I think it's a better way to attach tidymodels
family to your workspace via library(tidymodels)
wrapper rather than attaching individually.
If tidymodels
package installed correctly, (run a <- require(tidymodels)
and a
should be logical TRUE
) this piece of code will work;
QUESTION
I'm following a tutorial from Julia Silge (link here) on using tidymodels and recipes. I can get most of the way through without a problem but when I come to calling the fit_resamples()
function I get the error: Error: The first argument to [fit_resamples()] should be either a model or workflow.
I'm copying the code in the tutorial character for character, and everything runs fine up to and including printing out validation_splits
. But as soon as I call fit_resamples()
I get the error above (link to relevant part of tutorial). If useful, the output of rlang::last_error()
is:
ANSWER
Answered 2021-Jun-26 at 16:03The blog post you are looking at is fairly old, and there was a change to tune a while back so that you should now put either a workflow or a model first. Hence the error message:
The first argument to [fit_resamples()] should be either a model or workflow.
The fix is to put your model or workflow as the first argument, like this:
QUESTION
I want to use some of the parameters of the original deepnet
package, so I set up a custom model. I read Caret's documentation (Custom Model), but it doesn't work.
Here is my code for setting up the customized model:
...ANSWER
Answered 2021-Mar-08 at 19:27I found the answer myself...
It was a simple mistake: I had to remove the quotation marks in method
when applying the customized model:
QUESTION
I got hold on an SUPER-FAST algorithm that generates an array of random bytes, uniformly. It's 6 times faster than c++ uniform distribution and mersenne-twister of std library.
The count of an array is divisible by 4, so it can be interpreted as array of integers. Casting each entry to an integer, produces values in the range [INT_MIN, INT_MAX]
. But how can I transform these integer values to lie between my own [min, maximum]
?
I want to avoid any if-else, to avoid branching.
Maybe I should apply some bitwise logic, to discard irrelevant bits in each number? (because all remaining, unmasked bits will be either 0 or 1 anyway). If I can extract the most significant bit in my maximum-value, I could mask any bits that are more significant than that one, in my integers.
For example, if I want my max
to be 17, then it is 00010001
in binary form. Maybe my mask would then look as 00011111
? I could then apply it to all numbers in my array.
But, this mask is wrong ...It actually allows values up to (1+2+4+8+16)
:(
What can I do? Also, how to take care of the min
?
Edit
I am generating millions of numbers every frame of my application, for neural networks. I managed to vectorize the code using AXV2 for float variants (using this post), but need to get integers working too.
...ANSWER
Answered 2021-Jan-04 at 13:34The core idea is to use modulo instead of bitwise masks, which are useless in non-power-of-2 case. No branching is also a bit weird requirement. What you want is "fast enough", not "no branching and bitwise masks".
So assume that we have a function
QUESTION
i have been provided middleearth.h/cpp and was asked to make a makefile, doxyfile (which i did correctly) and a topological.cpp that works but has a small mistake in the output and i need help with that please.ill provide all three files and the text we use to test and the error.
...ANSWER
Answered 2020-Nov-17 at 06:15You are confusing yourself. You have your solution in edges
. There isn't a reason to read the data a second time. For example, you can simply output sorted/unique elements of edges
, e.g. the modifications to your code are:
QUESTION
I am attempting to use a for
loop to rename the rows and columns of a matrix via the following code:
ANSWER
Answered 2020-Sep-28 at 02:13For a matrix Z
without any defined row or column names, the value of rownames(Z)
and colnames(Z)
is NULL
. You're getting this error because you're trying to subset [i]
into NULL
, which doesn't work.
QUESTION
I know that I can set the RNGversion with e.g.
...ANSWER
Answered 2020-Sep-14 at 12:42Studying the source code of RNGversion
is elucidating.
QUESTION
I'm working with a >1 GB data set and running into out of memory ("Cannot allocate...") errors in ggplot2
graphing. In trying to research where all my memory is going (with the help of sources like this and this and this, I've discovered that the following code with dummy data causes significant memory usage that appears to be unclaimed in the Windows Task Manager even after repeated calls to gc()
.
ANSWER
Answered 2020-Aug-10 at 16:40This is just a partial answer, with regards to one aspect of the problem.
When you put yintercept
inside the aes()
function, you're instructing ggplot2 to map the yintercept
aesthetic to every row in the data
argument. Hence, the geom_hline()
layer transforms it's data into a large data.frame containing many rows. If you do not put it inside the aes()
function, but use it as a normal argument to the layer, the layer data will remain small. See example below.
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