mixt | Matched Interaction Across Tissues web application | Machine Learning library

 by   fjukstad JavaScript Version: v1.0 License: MIT

kandi X-RAY | mixt Summary

kandi X-RAY | mixt Summary

mixt is a JavaScript library typically used in Healthcare, Pharma, Life Sciences, Artificial Intelligence, Machine Learning, React applications. mixt has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

Matched Interaction Across Tissues (MIxT) is a system designed for exploring and comparing transcriptional profiles from two or more matched tissues across individuals. Here, the MIxT system is applied to tumor and blood transcriptional profiles from breast cancer patients from the Norwegian Women and Cancer study. Users can browse through all the results generated for this study, visualize gene co-expression networks and expression heatmaps, and search for genes, gene lists, and pathways. The application runs at mixt-blood-tumor.bci.mcgill.ca.
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              mixt has a low active ecosystem.
              It has 5 star(s) with 2 fork(s). There are 2 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 5 open issues and 2 have been closed. On average issues are closed in 11 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of mixt is v1.0

            kandi-Quality Quality

              mixt has no bugs reported.

            kandi-Security Security

              mixt has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              mixt is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              mixt releases are available to install and integrate.
              Installation instructions are available. Examples and code snippets are not available.

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            mixt Key Features

            No Key Features are available at this moment for mixt.

            mixt Examples and Code Snippets

            No Code Snippets are available at this moment for mixt.

            Community Discussions

            QUESTION

            web scraping unable to get all data
            Asked 2021-Mar-08 at 12:54

            I tried accessing wit multiple ways to orpi's website and with each program, I have made, and each request returns only the data on available on HTML which is the navbar and some useless info, I'm trying to get any info for any housing but the part including the housing info is not getting fetched

            This is the page I'm trying to get data from this link

            and i'm trying to get any thing included in

            please i've tried with these libraries and nothing is getting fetched: scrapy, beautifulsoup, requests from nodejs, requests from python.

            here are some codes i have tried :

            ...

            ANSWER

            Answered 2021-Mar-08 at 12:54
            from selenium import webdriver
            from time import sleep
            
            driver = webdriver.Firefox() # Or Chrome()
            driver.get("https://www.orpi.com/recherche/rent?transaction=rent&resultUrl=&realEstateTypes%5B0%5D=maison&realEstateTypes%5B1%5D=appartement&realEstateTypes%5B2%5D=terrain&realEstateTypes%5B3%5D=immeuble&realEstateTypes%5B4%5D=stationnement&agency=&minSurface=&maxSurface=&newBuild=&oldBuild=&minPrice=&maxPrice=&sort=date-down&layoutType=mixte&nbBedrooms=&page=&minLotSurface=&maxLotSurface=&minStoryLocation=&maxStoryLocation=")
            
            sleep(3)
            html = driver.page_source    
            driver.quit()
            # Do your stuff with html
            

            Source https://stackoverflow.com/questions/66529649

            QUESTION

            Mariadb master slave replication : Empty Set / Not using Binary logs
            Asked 2021-Feb-08 at 22:44

            I'm trying to setup a master slave replication in between 2 MariaDB Databases version 5.5.68, under CentOS7.

            First steps are straigth forwards :

            1. Modify my.cnf.conf and add the following lines under [mysqld]
            ...

            ANSWER

            Answered 2021-Feb-08 at 22:44

            Solved!

            I used the [mysqld] section under /etc/my.cnf.d/server.cnf But didn't pay attention that my /etc/my.cnf file was missing.

            so... The content of "my.cnf.d/*.cnf" files were not used at all solution was :

            re- create /etc/my.cnf file

            Source https://stackoverflow.com/questions/66104638

            QUESTION

            How can we swap byte in a Vector256 (System.Runtime.Intrinsics.X86)?
            Asked 2019-Oct-05 at 22:55

            I'm optimizing a Gaussian Filter in c#, using the new System.Runtime.Intrinsics.X86 namespace (Single instruction, multiple data) found in .net core 3.0.

            I'm working with Vector256 for the biggest part of the algorithm, but at the end i must do a division. I found how to go from my Vector256 to 2 Vector256 to be able to do a divison, but i'm having trouble bringing it back to a ushort version so i can output the data. I'm trying to use Avx2.PackUnsignedSaturate(vector1, vector2), which effectively give me a Vector256 but the items have been mixte (kind of a endianness, but the individual value of each of my ushort are there)

            All i need would be to swap a couple byte in the middle. Using a regular loop (without SIMD) to put back the value in the output would be easy, but also a waste of time (well, i think ... hard to say if i can't benchmark the simd solution)

            -I've tried a shuffle on the Vector256 casted as bytes. I'm not able to achieved what i need, it seem the byte movement are confined in their respective 128bits. -I've tried looking at MSDN, there's no example or descriptions on those new functions, so for most of them, i have no idea what they are doing -I've tried looking at Intel guide (https://software.intel.com/sites/default/files/managed/39/c5/325462-sdm-vol-1-2abcd-3abcd.pdf), While they do explain some stuff, those that i think i would need (XCHG or BSWAP maybe?), could not find them in the namespace.

            ...

            ANSWER

            Answered 2019-Oct-05 at 22:55

            Avx2.PackUnsignedSaturate aka VPACKUSWB/VPACKUSDW, like many 256bit operations, works like two the 128bit versions of the operation side by side instead of like a scaled up version of the 128bit version. There is a nice image on this page. There are cross-lane shuffles too, for example Avx2.Permute4x64 which you can use to put the blocks in their "natural" order if you wanted. It takes a Vector256 but that doesn't matter, just reinterpret your vector before and after.

            The pack operations pair well with the unpack functions (eg Avx2.UnpackLow), if you use those rather than the "convert" functions then you should not need additional permutes.

            Using a scalar loop would indeed not be efficient, not only because it's a scalar loop but also because converting between vectors and a "bunch of scalars" has overhead.

            There is a deeper problem in this question, because a Gaussian filter (or in general any convolution really) does not normally include a division, and therefore doesn't end up needing this step. Since your data is ushorts, you could use Avx2.MultiplyHigh to scale by a factor between 0 and 1, without having to do anything complicated.

            Source https://stackoverflow.com/questions/58252804

            QUESTION

            Convert categorical variables to numeric in R
            Asked 2019-Jun-18 at 12:36

            I have a huge database and I am having many categorical variables. You can watch it here:

            ...

            ANSWER

            Answered 2017-Dec-21 at 16:45

            You can use unclass() to display numeric values of factor variables :

            Source https://stackoverflow.com/questions/47922184

            QUESTION

            How to select the latest or next element of a list with buttons
            Asked 2019-Apr-30 at 14:23

            I am trying to make a little website I need to do for a lesson, we need to select items in a list and I have 2 arrows to select the item below or after the current item.

            Here is an exemple:

            So if I want to go back it needs to select "Gratin de knöpfli".

            I had the idea to select it with an id but i really don't know how to do it.

            PHP

            ...

            ANSWER

            Answered 2019-Apr-30 at 13:30

            You have to pass $fichierSelectionne into afficherListe function and make item which has equal $fichier selected="selected":

            Source https://stackoverflow.com/questions/55920637

            QUESTION

            Avoid redefinition error in template class
            Asked 2018-Oct-18 at 10:03

            For IO purposes, I need to associate to various type a character string. To this end, I created a template class names, which is specialized for each type I need to name. Here is the header file:

            ...

            ANSWER

            Answered 2018-Oct-18 at 09:55

            You have two options:

            1. On Windows, pick just the one specialisation and don't define the other one. (Ew.)
            2. What you really need here is a strong typedef, rather than just a thin type alias. You need Index and Integer to be actually different types, rather than just names for something else that might be the same in both cases.

              If you don't mind a bit of an arseache when it comes to using these types for arithmetic, a scoped enum may be appropriate:

            Source https://stackoverflow.com/questions/52871411

            QUESTION

            How make labels of plot clear
            Asked 2018-Aug-06 at 12:43

            I did a plot explaining occurrences of each modality for many variables. It is about clustering problem to show which variables are explaining each cluster. So

            ...

            ANSWER

            Answered 2018-Aug-06 at 12:42

            You can try to resize the text:

            Source https://stackoverflow.com/questions/51707852

            QUESTION

            WP Images not showing up with HTTPS
            Asked 2018-Jun-15 at 10:51

            Im facing a strange problem with SSL, in fact all my images didn't showing up on SSL, this is an example :

            HTTP : http://www.electronique-mixte.fr/wp-content/uploads/2017/06/numidea-logo-electronique-mixte.png

            HTTPS : https://www.electronique-mixte.fr/wp-content/uploads/2017/06/numidea-logo-electronique-mixte.png

            For the same picture, the HTTP is working, but the HTTPS is not !

            Any idea ?

            Website :

            HTTPS picture 404 error:

            HTTP working fine:

            Another browser (Edge):

            PS : i'm using incognito tab, (avoid cache)

            ...

            ANSWER

            Answered 2018-Jun-11 at 11:50

            I found a solution :

            1. Update db, and change http to HTTPS (i used Better Search Replace Plugin)
            2. Remove cache
            3. Update htaccess change all http urls to HTTPS
            4. force using SSL (i used Really Simple SSL plugin)

            Thank you for your comments !

            Source https://stackoverflow.com/questions/50794152

            QUESTION

            Namespace inherited from include file in C++
            Asked 2018-Apr-26 at 15:00

            For a statistical package, I need to include a numerical computation library, and I chose Armadillo. I want to keep all the dependencies to Armadillo in a single "wrapper" file (to be able to switch numerical libraries easily). At the moment the wrapper to Armadillo, called mixt_LinAlg.h only contains:

            ...

            ANSWER

            Answered 2018-Apr-26 at 15:00

            Add to your header your own function approx_equal in your own namespace, which wraps around arma::approx_equal or any other implementation.

            In other words add something like this to you header for Armadillo:

            Source https://stackoverflow.com/questions/50046174

            QUESTION

            imageView in iOS 11 using Swift
            Asked 2018-Mar-01 at 16:24

            I created 2 customs buttons in my navigation Controller. I have one left button and one right, and both have some text + an arrow icon. Since I updated to iOS 11, the size of icons has changed and I don't know why.

            This this the difference between iOS 10 (Left) and iOS 11 (right):

            How can I change that?

            This is a piece of my code:

            ...

            ANSWER

            Answered 2017-Sep-25 at 21:12

            You need to add width constraint for your button in xCode 9. Like this:

            Source https://stackoverflow.com/questions/46414107

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install mixt

            There are two options for installing and running the MIxT web application, either compile and run on your machine, or use the Docker Image.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            https://github.com/fjukstad/mixt.git

          • CLI

            gh repo clone fjukstad/mixt

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            git@github.com:fjukstad/mixt.git

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