virus | simple Node.js virus

I think the problem is that rule catFasta doesn't contain the wildcard barcode. If you think about it, what job name would you expect in {wildcards.barcode}.{rule}.{jobid}?

Maybe a solution could be to add to each rule a jobname parameter that could be {barcode} for guppyplex and minion and 'all_barcodes' for catFasta. Then use --jobname "{params.jobname}.{rule}.{jobid}"

This might be a very simple case of fixing the encoding.

Your error says:

This should be a comment (as it's not an answer) but I need some formatting and a lot of space here. The short version is that you need to find out why git index-pack is misbehaving or failing. (Fetching over a smart protocol normally retrieves a so-called thin pack, which git fetch needs to "fatten" using git index-pack --fix-thin.)

The "invalid index-pack output" error occurs if the output from git index-pack does not match what git fetch-pack expects. Here's the code involved:

You'll find the file Blob/Buffer in file.buffer if you're using multer with MemoryStorage (which is the default). All available file properties are documented here: https://github.com/expressjs/multer#file-information.

This Request Parsing in Node.js Guide (it's free) will help you with file uploads in Node.js.

As you can see in your error :

Can't find google.com

Container does't have access to network and therefore it can't find google !

And I can't see your Dockerfile and docker-compose.yml (If you use it) in the question above !

BUT

First step it's better to create a network using docker network create --help

--help ------> For seeing which options you want to use for your container networking :) (according to docs.docker)

Second step it's to EXPOSE: the port on docker file (docs.docker & Article about concept of EXPOSE)

AND LAST : Try to check your container networking another way and simply use docker run

Try to use bash in your main image That is Cent OS for checking the network of container

You could also do:

It looks like your spreadSpeed is an int. Because of this any division operation you do with it gets rounded down.

Since you don't cast (infected / population) to an int, they both proboably are int. Meaning the division will also be rounded down which will result in a 0 until the infected are more than the population.

To fix this issue, you could make spreadSpeed a double instead of an int and cast the population in the division to a double to force the division to use floating point numbers and not integers. For this to work you also need to cast the spreadSpeed to an int when removing people from the population/adding people to the infected.

Pasting your code into godbolt quickly reveals the problem. struct stat isn't defined. For linux, you need to #include and #include for struct stat. Pay attention to the remaining warning(s).