calculate-cosine-similarity | calculate cosine similarity with two array | Topic Modeling library
kandi X-RAY | calculate-cosine-similarity Summary
kandi X-RAY | calculate-cosine-similarity Summary
Calculate Cosine Similarity is a package for calculate similarity between two arrays. This project from my undergraduate thesis’project. When i develope hoax analyze system i need package for calculate similarity between two arrays and i did not find it. So i create package for calculate similarity two arrays with cosine similarity algorithm.
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QUESTION
I suspect this is something very fundamental I don't know or understand about this code; my only excuse is that I am a complete beginner in python.
I am trying some of the cosine similarity matrix calculations from this post:
What's the fastest way in Python to calculate cosine similarity given sparse matrix data?
One of them requires the calculation of the reciprocal of the diagonal of the initial matrix product.
Say that he initial matrix is m
, each row of which represents an 'object', whose 'coordinates' are in the columns of the matrix. So you want to calculate cosine similarities between rows.
Then, to use the matrix product method, you do something like mp = numpy.dot(m, m.T)
.
Now, if there are no rows with only 0's in m
, the diagonal of mp
can never have any zero values, as each of its elements is the sum of the squared elements of the corresponding row of m
.
The m
I am using in my calculations has indeed no rows with all 0's.
And indeed, when I do:
ANSWER
Answered 2021-Apr-22 at 13:03I think the problem is dtype
uint8 : Unsigned integer (0 to 255)
QUESTION
I have been working with some R
packages that calculate (cosine) (sparse) similarity matrices from sparse binary matrices, e.g. proxyC
.
As I am now starting (and learning) to use python
as well, and I was told it might even be faster, I would like to try and run the same calculations there.
I found this interesting post:
What's the fastest way in Python to calculate cosine similarity given sparse matrix data?
which describes a few methods.
I did try some of them out after writing out a small test matrix myself by hand.
Now I would like to try on 'real' data.
And that's where I encounter a problem I currently cannot solve.
My data come in tsv files that associate objects (ID's) to comma-separated lists of features (FP's). E.g.:
...ANSWER
Answered 2021-Apr-19 at 15:21import pandas as pd
df = pd.DataFrame({'ID':[1,2,3], 'FP':["A,B,C","A,D","C,D,F"]})
>>> df
ID FP
0 1 A,B,C
1 2 A,D
2 3 C,D,F
QUESTION
Please help finding the ways to create a distributed matrix from the (user, feature, value) records in a DataFrame where features and their values are stored in a column.
Excerpts of the data is below but there are large number of users and features, and no all features are tested for users. Hence lots of feature values are null and to be imputed to 0.
For instance, a blood test may have sugar level, cholesterol level, etc as features. If those levels are not acceptable, then 1 is set as the value. But not all the features will be tested for the users (or patients).
...ANSWER
Answered 2019-Nov-20 at 15:26Maybe you could transform each row into json representation, e.g:
QUESTION
I have an input dataframe input_df
as:
ANSWER
Answered 2018-Jun-27 at 09:56To convert the Matrix
to a dataframe as specified, do the following. It first converts the matrix to a dataframe containing a single column with an array. Then foldLeft
is used to break the array into separate columns.
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