shub | StudyHub Impress Application | File Utils library

by meta-coders JavaScript Version: Current License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(6)Vulnerabilities Install Support

kandi X-RAY | shub Summary

shub is a JavaScript library typically used in Utilities, File Utils, Nodejs applications. shub has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

StudyHub Impress Application

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Quality

Security

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Reuse

Support

shub has a low active ecosystem.

It has 8 star(s) with 0 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

shub has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of shub is current.

Quality

shub has 0 bugs and 0 code smells.

Security

shub has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

shub code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

shub is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

shub releases are not available. You will need to build from source code and install.

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shub Key Features

No Key Features are available at this moment for shub.

shub Examples and Code Snippets

No Code Snippets are available at this moment for shub.

Community Discussions

Trending Discussions on shub

For Loop on List of Dictionaries updating all previous values

Possible Unhandled Promise Rejection (id: 0): axios in Redux

Unable to build writable singularity container

How to use Snakemake container for htslib (bgzip + tabix)

How to change the default prompt in a singularity container

Snakemake with Singularity

QUESTION

For Loop on List of Dictionaries updating all previous values

Asked 2022-Mar-10 at 08:04

I am trying to update the values of the dictionary as the values provided by another list, but the update is happening to all of the previous values as well.

Here is my code snippet:

...

ANSWER

Answered 2022-Mar-10 at 07:29

When you do the [dict]*5 operation, what you have afterwards is a list of 5 references to the same dictionary object in memory, thus when you edit one you are actually editing all of them. For more explanation of this, look up the difference between Mutable and Immutable objects in python (this occurs because dictionaries are mutable).

To accomplish what you want, you need to explicitly make copies of the initial dict.

Source https://stackoverflow.com/questions/71420189

QUESTION

Possible Unhandled Promise Rejection (id: 0): axios in Redux

Asked 2022-Jan-20 at 10:32

I am calling an API in action, but it gives me a warning: Possible Unhandled Promise Rejection (id: 0): here is my code: actions.js

...

ANSWER

Answered 2022-Jan-20 at 10:32

You need to move try/catch inside the dispatch function:

Source https://stackoverflow.com/questions/70784490

QUESTION

Unable to build writable singularity container

Asked 2021-Jan-06 at 18:14

I am trying to build a writable singularity container with the command sudo singularity build --writable my_container.img docker://image_name, but I get the error Error for command "build": unknown flag: --writable.

I decided to follow a guide from Singularity (here) to see if I could find my problem. I am using the command sudo singularity build --writable lolcow.img shub://GodloveD/lolcow, but I am getting the same error Error for command "build": unknown flag: --writable.

I am on singularity version 3.6.4.

Does anyone happen to know what might be going on?

...

ANSWER

Answered 2021-Jan-06 at 18:14

--writable is option for running. That is for building:

Source https://stackoverflow.com/questions/65599721

QUESTION

How to use Snakemake container for htslib (bgzip + tabix)

Asked 2020-Sep-24 at 21:01

I have a pipeline which uses a global singularity image and rule-based conda wrappers.

However, some of the tools don't have wrappers (i.e. htslib's bgzip and tabix).

Now I need to learn how to run jobs in containers.

In the official documentation link it says:

"Allowed image urls entail everything supported by singularity (e.g., shub:// and docker://)."

Now I've tried the following image from singularity hub but I get an error:

minimal reproducible example: config.yaml ...

ANSWER

Answered 2020-Sep-24 at 17:38

Using another container solves the issue; however, the fact I'm getting errors from biocontainers is troubling given that these are both very common and used as examples in the literature so I will award the top-answer to whomever can solve that specific issue.

As it were, the use of stackleader/bgzip-utility solve the issue of actually running this rule in a container.

Source https://stackoverflow.com/questions/64050974

QUESTION

How to change the default prompt in a singularity container

Asked 2020-Apr-16 at 13:14

I am creating a Singularity image and I want to have a custom bash prompt, just like I can set a bash prompt as a normal user by setting the variable PS1 in my ~/.bash_profile.

But, unfortunately, Singularity does something to enforce its own prompt that looks like this: Singularity>. This is not a very helpful prompt.

I tried to set PS1 in the definition file like in this example:

...

ANSWER

Answered 2020-Apr-16 at 13:14

By default, the shells run by singularity explicitly don't load any profile or rc files. The prompt, annoying as it is, is there to remind you that you are in an image, not the host OS.

If you want to override that anyway, you need to add an additional file to /.singularity.d/env that will be run after everything else. e.g.,

Source https://stackoverflow.com/questions/61116965

QUESTION

Snakemake with Singularity

Asked 2020-Feb-03 at 22:49

I'm trying to use Singularity within one of my Snakemake rules. This works as expected when running my Snakemake pipeline locally. However, when I try to submit using sbatch onto my computing cluster, I run into errors. I'm wondering if you have any suggestions about how to translate the local pipeline to one that can work on the cluster. Thank you in advance!

The rule which causes errors uses Singularity to call variants with DeepVariant:

...

ANSWER

Answered 2020-Feb-03 at 22:49

As seen in the resolved command of error message where semi-colon separates two lines of shell: instead of whitespace, this error is due to string formatting in shell:.

You could use triple-quoted format:

Source https://stackoverflow.com/questions/60044919

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install shub

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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