ribosome | Simple code generator | Generator Utils library
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kandi X-RAY | ribosome Summary
Simple code generator
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QUESTION
Hi all I have used this code to produce the plot below, someone know How I can switch the subplot, for example sorting them according to title? (25nm....1000nm)?
...ANSWER
Answered 2021-Apr-23 at 10:09try setting the levels of the factor before you plot
QUESTION
In the existing csv there is a column that contains one of the following codes i.e. outer membrane [GO:0019867] for every row. I want to add a column to the csv that will give a category to every row i.e. OuterMembrane. So I have add an empty column and I thought of making this list in order to automatically when a code is referred to the csv, the general category will be added. (not all coding included)
...ANSWER
Answered 2021-Mar-16 at 10:03You could use intersect function in the R package called dplyr which is something that you can use in finding common elements between different columns, different lists etc. Its worth checking out.
For example, you can read the columns as vectors and then perform the following:
column1 = c(1,2,3,4)
column2 = c(6,5,4,3,2)
intersect(vector_1, vector_2)
Now this will return 3 and 4 as they are common in both the columns.
QUESTION
I'm trying to carve out some binding sites with ligands from cif-files of ribosome crystal structures, and have encountered an annoying problem involving a type error.
TypeError: %c requires int or char
Using the code below,
...ANSWER
Answered 2020-May-18 at 15:16The chain name format in _ATOM_FORMAT_STRING
is %c
, while in this case you have chain named QA
.
Chain names in PDB files were traditionally single characters. But there are only so many letters and digits. For ribosome it's necessary to use longer names. The pdb format has space for a second letter -- empty column on the left from the 1-character chain name. Many programs support it, but not all, and this is not part of the official specification.
So you can either use PDB files with 2-character chains (if the rest of your workflow supports it) or rename chains in the output (your output is only a tiny part of the original structure).
Here is how to do it in gemmi:
QUESTION
I know similar questions have been asked which has led me write the current code but I am still not able to get the correct output. Question: If Column 1 (in file 1) matches Column 5 (in file 2), print all columns in file 2 and columns 3 and 4 (in file 1) to a new file.
File 1 (tab-delimited)
...ANSWER
Answered 2020-Feb-28 at 17:59Could you please try following.
QUESTION
I have a string as follows where I want to remove consecutive single letter characters longer than 5.
...ANSWER
Answered 2019-Jul-27 at 14:38I believe in this case, we can use regular expression to solve this problem:
QUESTION
I have multiple piece text from json For example
...ANSWER
Answered 2019-May-15 at 10:56You have to write in pythonic way like :
QUESTION
I am new in this community and I would like to ask this (I did not find any question that could help me).
I have this string:
...ANSWER
Answered 2017-Oct-24 at 09:12What about this
QUESTION
I'm trying to create a VSCode extension for Ribosome .py.dna
files
Basically, .py.dna
is identical to python, except that lines that start with .
should have comment syntax highlighting.
So far, this is what I have for my tmLanguage.json
:
ANSWER
Answered 2017-Oct-14 at 21:24Just add "include": "source.python"
to your patterns
:
QUESTION
I have mainpage.html page which consists of large no. of words. I would like to add an search bar at top with text input box and ,search Next, previous button ( as shown in image ) and hide button to hide the search bar , where if user put any text inside input box will highlight the text and if there are multiple text string with same name then from Next and Previous button will navigate user to next or previous Text similar to ctrl+F in Desktop Browser ( Below the screenshot of search bar on chrome Browser )
I searched for the solution but found none, and I have clueless how to start.
PS: I am developing an offline app for android with tons of such page, and It is complicated and none found any solution to implement such searchbar in WebView. So I thought if it is possible, I would embedded search bar inside html instead.
My html page is
...ANSWER
Answered 2017-Oct-15 at 14:24I know most SO veterans do not like questions like this - but I do (then again, I'm no veteran).
I wrote a couple of functions for you to try out:
searchTermInPage
- searches a term inside the HTML, highlights all occurrences, returns list of textNode
s containing the term
scrollToTextNode
- very simple - scrolls the text node into view.
use these functions to build yourself the interface (they will probably need some tweaking, but it takes care of the " I have clueless how to start.")
QUESTION
ANSWER
Answered 2017-Jun-30 at 11:13You could make the x-variable discrete instead of continuous. You consider the values as categorical instead of numeric. This would make an evenly spaced bar for each of the values.
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