basenji | Sequential regulatory activity predictions | Machine Learning library

by calico Jupyter Notebook Version: 0.1 License: Apache-2.0

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | basenji Summary

basenji is a Jupyter Notebook library typically used in Artificial Intelligence, Machine Learning, Tensorflow applications. basenji has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

Basenji provides researchers with tools to:.

Support

Quality

Security

License

Reuse

Support

basenji has a low active ecosystem.

It has 308 star(s) with 111 fork(s). There are 30 watchers for this library.

It had no major release in the last 12 months.

There are 49 open issues and 80 have been closed. On average issues are closed in 8 days. There are 3 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of basenji is 0.1

Quality

basenji has 0 bugs and 0 code smells.

Security

basenji has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

basenji code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

basenji is licensed under the Apache-2.0 License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

basenji releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

basenji saves you 9648 person hours of effort in developing the same functionality from scratch.

It has 19681 lines of code, 618 functions and 99 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed basenji and discovered the below as its top functions. This is intended to give you an instant insight into basenji implemented functionality, and help decide if they suit your requirements.

Run the model
Create TFRecord Dataset
Make data ops from files_pattern
Sort TFRecords by pattern
Fit the model to the model
Compile the model
Safely compute the next iteration
Calculate the gradients of the ensemble
Calculate the gradients for each prediction
Convert SNPs to sequence
Write a score file
Build the keras model
Learn the shift from single - end sequences
Function to plot the regplot
Convolution layer
Reads alignments from a BAM file
Calculates the genome coverage for multiple reads
Convert SNPs to BED format
Create an h5 file for ANSI output
Generates joint plot
Train the GC model
Create hyperparameters
Compute the TensorFlow Tensor
Evaluate a hdf5 model
Write this variant to a file
Calculate Leakage

Get all kandi verified functions for this library.

basenji Key Features

No Key Features are available at this moment for basenji.

basenji Examples and Code Snippets

No Code Snippets are available at this moment for basenji.

Community Discussions

Trending Discussions on basenji

React/Axios - Display part of URL

Karate API Testing - verify if "retriever" breed is within the list

QUESTION

React/Axios - Display part of URL

Asked 2020-Jan-12 at 01:47

I'm using this Dogs API and want to display the name of the dog with the image generated.

Currently, the text when I click a button to generate a random image with the appropriate link to the image shows up like this:

https://images.dog.ceo/breeds/basenji/n02110806_4280.jpg

I want just the basenji, not the whole URL.

This can be shown in the setText function.

How can I just get the name of the dog from the URL and not the whole thing itself.

CODE

...

ANSWER

Answered 2020-Jan-12 at 01:44

Although, dont know but if every link shows up the text like one you mentioned, the one of the solution would be to split the text on '/' based on index to get the breed

Source https://stackoverflow.com/questions/59700246

QUESTION

Karate API Testing - verify if "retriever" breed is within the list

Asked 2018-Nov-08 at 19:37

I am testing a public API that lists all types of breeds.

'https://dog.ceo/api/breeds/list/all'

Within the response I need to verify if "retriever" breed is within the list. My feature file looks like this

Feature: Testing a REST API

...

ANSWER

Answered 2018-Nov-08 at 17:48

Look at the response structure carefully. These will work:

Source https://stackoverflow.com/questions/53212530

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install basenji

Basenji/Akita were developed with Python3 and a variety of scientific computing dependencies, which you can see and install via requirements.txt for pip and environment.yml for Anaconda. For each case, we kept TensorFlow separate to allow you to choose the install method that works best for you. The codebase is compatible with the latest TensorFlow 2, but should also work with 1.15. Run the following to install dependencies and Basenji with Anaconda. Alternatively, if you want to guarantee working versions of each dependency, you can install via a fully pre-specified environment. Or the following to install dependencies and Basenji with pip and setuptools. Then we recommend setting the following environmental variables. To verify the install, launch python and run.

Support

At this stage, Basenji is something in between personal research code and accessible software for wide use. The primary challenge is uncertainty in what the best role for this type of toolkit is going to be in functional genomics and statistical genetics. The computational requirements don't make it easy either. Thus, this package is under active development, and I encourage anyone to get in touch to relate your experience and request clarifications or additional features, documentation, or tutorials.

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