cgpBattenberg | Battenberg algorithm and associated implementation script

by cancerit Perl Version: 3.5.3 License: AGPL-3.0

X-Ray Key Features Code Snippets(3)Community Discussions Vulnerabilities Install Support

kandi X-RAY | cgpBattenberg Summary

cgpBattenberg is a Perl library. cgpBattenberg has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

An installation helper, perl wrapper and the R program Battenberg which detects subclonality and copy number in matched NGS data.

Support

Quality

Security

License

Reuse

Support

cgpBattenberg has a low active ecosystem.

It has 44 star(s) with 14 fork(s). There are 25 watchers for this library.

It had no major release in the last 12 months.

There are 17 open issues and 67 have been closed. On average issues are closed in 130 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of cgpBattenberg is 3.5.3

Quality

cgpBattenberg has 0 bugs and 0 code smells.

Security

cgpBattenberg has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

cgpBattenberg code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

cgpBattenberg is licensed under the AGPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

cgpBattenberg releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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cgpBattenberg Key Features

No Key Features are available at this moment for cgpBattenberg.

cgpBattenberg Examples and Code Snippets

cgpBattenberg,LICENCE

Perl

Lines of Code : 28

License : Strong Copyleft (AGPL-3.0)

Copy

Copyright (c) 2014-2018 Genome Research Ltd.

Author: Cancer Genome Project 

This file is part of cgpBattenberg.

cgpBattenberg is free software: you can redistribute it and/or modify it under
the terms of the GNU Affero General Public License as pu

cgpBattenberg,Installation

Perl

Lines of Code : 3

License : Strong Copyleft (AGPL-3.0)

Copy

setup.sh  [X/lib/perl:Y/lib/perl]
cd Rsupport
./setupR.sh /R-libs

cgpBattenberg,Battenberg R code,Scientific notation in R

Perl

Lines of Code : 1

License : Strong Copyleft (AGPL-3.0)

Copy

options(scipen = 999)

Community Discussions

No Community Discussions are available at this moment for cgpBattenberg.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install cgpBattenberg

The battenberg R files are installed automatically from the Battenberg GitHub repository found here. The linked version is currently v2.2.5.
PCAP-core v2.1.3+
alleleCount v3.3.1+
cgpVcf v2.0.1+

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: