CaVEMan | SNV expectation maximisation based mutation | Genomics library
kandi X-RAY | CaVEMan Summary
kandi X-RAY | CaVEMan Summary
A C implementation of the CaVEMan program. Uses an expectation maximisation approach to calling single base substitutions in paired data. Designed for use with a compute farm/cluster most steps in the program make use of an index parameter. The split step is designed to divide the genome into chunks of adjustable size to optimise for runtime/memory usage requirements. For simple execution of CaVEMan please see [cgpCaVEManWrapper] | Master | Dev | | ------------------------------------------------------------------------------------------------------------------- | ---------------------------------------------------------------------------------------------------------------- | | [Build Status] | [Build Status] |.
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QUESTION
I am trying to use Torch for Label Propagation. I have a dataframe that looks like
...ANSWER
Answered 2021-Jun-10 at 10:00For other readers here, it seems like this is the implementation being asked about in this question.
The method you are using to try to predict labels works with labels for nodes, not edges. To visualize this, I plotted your example data and colored the plot by your Weight and Label columns (code to produce plot appended below) where Weight is the line thickness of the edge and Label is the color:
In order to use this method, you will need to produce data that looks like this, where each node (denoted by ID) gets exactly one node_label:
QUESTION
I'd like for a user who starts the application for the first time on a device to be able to access GPS data in that session. Currently, the user must close and then restart the application after providing location permission for the location data to show in the application. I have tried a variety of methods to resolve this. Most recently, I have moved requestPermission into Fragment1 which is also where locationManager is located.
...ANSWER
Answered 2021-May-12 at 06:32In addition, I took the caveman approach, and created "permissionAssessment()" that would run immediately following requestPermission() assuming that perhaps since permissions were likely granted by the user in requestPermission().
This approach will not work the first time when the permissions are granted by user.
This is because a prompt is shown to user for requesting permission using ActivityCompat.requestPermissions(...).
The actual granting/denial of permission would be done on a later stage when the user interacts with the prompt.
This means that the function permissionAssessment(...) which is being immediately run after the ActivityCompat.requestPermission(...) will not have the permissions hence wont run successfully for the first time and will require a Fragment "reload".
To ensure a successful run, you'll have to call the permissionAssessment(...) in the "success" callback of ActivityCompat.requestPermission(...). This is done using the function onRequestPermissionsResult(int requestCode, @NonNull String[] permissions, @NonNull int[] grantResults).
Here's my implementation :-
QUESTION
My app has a passcode view, conceptually similar to the iOS unlock screen. It's a UIViewController that I present within a new UIWindow. Works fine. I'm adding the capability to type the passcode using a hardware keyboard. The keyCommands method is not called, thus key presses not recognized, until the user taps anywhere on the screen at least once. It's a full-screen UIWindow/UIViewController so presumably it's a tap within the UIWindow/UIViewController. Once that tap occurs, keyCommands will be called as expected, and all works perfectly. I don't want to require the user to tap their screen before typing their passcode.
Any idea what's going on here, specifically why the user needs to tap the screen (and how to avoid that requirement)?
I have verified the UIViewController is the firstResponder by including a repeating NSTimer call to verify as such.
...ANSWER
Answered 2021-Mar-02 at 02:58The new UIWindow wasn't quite the "key window" in terms of capturing keyboard events, even with the makeKeyandVisible instruction. I verified this by temporarily adding the same code to a UIViewController on the app's main UIWindow. It received the keyboard events until I tapped the screen (the new UIWindow).
I changed this:
QUESTION
See EDIT below, the initial post almost has no meaning now but the question still remains.
I developing a neural network to semantically segment imagery. I have worked through various loss functions (categorical cross entropy (CCE), weight CCE, focal loss, tversky loss, jaccard loss, focal tversky loss, etc) which attempt to handle highly skewed class representation, though none are producing the desired effect. My advisor mentioned attempting to create a custom loss function which ignores false negatives for a specific class (but still penalizes false positives).
I have a 6 class problem and my network is setup to work in/with one-hot encoded truth data. As a result my loss function will accept two tensors, y_true, y_pred, of shape (batch, row, col, class) (which is currently (8, 128, 128, 6)). To be able to utilize the losses I have already explored I would like to alter y_pred to set the predicted value for the specific class (the 0th class) to always be correct. That is where y_true == class 0 set y_pred == class 0, otherwise do nothing.
I have spent way too much time attempting to create this loss function as a result of tensorflow tensors being immutable. My first attempt (which I was led to through my experience with numpy)
ANSWER
Answered 2021-Feb-19 at 18:36If I understand your question correctly, you are looking for something like this:
QUESTION
I'm trying to run some unit tests using moto and unittest based off of this example from muhannad0's blog.
Below is my code (minified the table creation as it's not so important).
...ANSWER
Answered 2021-Jan-15 at 13:23This looks like it's due to an incompatibility between the moto and mock libraries. The issue is being discussed here: https://github.com/spulec/moto/issues/3535
A temporary workaround is to fix those libraries to versions that are compatible. I'm currently fixing mock to 4.0.2 to avoid the AttributeError:
pip install mock==4.0.2
QUESTION
I have several .csv files in a folder
...ANSWER
Answered 2020-Dec-16 at 19:33Without knowing your desired output structure, my guess is that you want something like this:
QUESTION
Right now, I have dead simple use case of the inheritance, but for the life of me, I cannot get it to work.
The use case
My use case is thus:
- I have
BaseComponentthat has someLoaderComponent. It has methodsshowLoader()andhideLoader()for showing it and hiding it, respectively. - Every loadable component, or even every component, extends this
BaseComponent. Then, when there is network request, or we need to wait for a lot of stuff to render, we can justshowLoader(), and thenhideLoader()when the work is done.
Implementation
My implementation of this is pretty straightforward, but for some obscure reason, it's not working.
base.component.ts
ANSWER
Answered 2020-Jul-11 at 08:27Problem
From What I understand ur question is you are not only using just component inheritance but template composition as well
QUESTION
Hello everyone I have been using StackOverflow for some time and always find the correct answer with the search box but this time I couldn't! that is why I ask for your help. I am sure the solution its simple but I I have done several test and I could fix my issue.
I want to make its if a image fails to load, change a text related to that image and make that text RED that is already working but caveman style, that why i need your help here
...ANSWER
Answered 2020-Mar-20 at 21:28for (let i = 0; i < 26; i++) {
document.getElementById(i).onerror = function() {Fu(i)};
}
function Fu(num) {
document.getElementById(num).style.display = "none";
var x = document.getElementById("T"+ num);
x.innerHTML = "ERROR";
x.style.color = "red";
x.style.fontWeight = "bolder"
x.style.backgroundColor="800000";
};
QUESTION
I am attempting to run tests which require pytest-qt (for testing PySide2 dialogs) on CircleCI. I am getting the following error:
ANSWER
Answered 2019-Jun-30 at 23:49I have pulled the container circleci/python:3.6.8-stretch locally, cloned your repository and tried to execute the tests, whereas I could reproduce the error.
First thing to do is to enable the debug mode for Qt runtime so it prints some info on errors. This can be done by settings the environment variable QT_DEBUG_PLUGINS:
QUESTION
I wanna create a 404 error webpage using the code provided here:
https://codepen.io/SofiaSergio/pen/RMjyRL
As the author mentioned, this is pure CSS. Howsoever I'm not sure if the usage of Pure CSS is same as standard CSS. I created an HTML and CSS file mystyle.css , placed them in a folder
ANSWER
Answered 2019-Sep-29 at 13:51Well, it seems you are using a CSS which needs pre-processor, like Sass or Less. Try to include a pre-processor and try again. Try watching this:- https://webdesign.tutsplus.com/tutorials/watch-and-compile-sass-in-five-quick-steps--cms-28275
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