packrat | A modular , automated backup system | Continuous Backup library
kandi X-RAY | packrat Summary
kandi X-RAY | packrat Summary
Packrat is an automated, modular backup system written in Bash. It has the ability to do encrypted, incremental backups of your filesystem and can store them somewhere offsite via FTP, SSH, or S3. It can also backup MySQL and PostgreSQL databases, though these will not be incremental backups, always a full dump. Packrat has no ability to perform a restore process. You'll have to do this yourself. See the Filesystem Restores section for a quick tutorial on how to perform a restore with the dar utility.
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Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of packrat
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packrat Examples and Code Snippets
Community Discussions
Trending Discussions on packrat
QUESTION
I am working on an R Shiny project to visualize the spread of COVID19 around the world. When I run the app locally, it works just fine, but when I try to deploy the app, it runs into issues which I am assuming are related to storing the shapefiles: I get an error on the map page that reads, "An error has occurred. Check your logs or contact the app author for clarification."
Here is my code so far:
...ANSWER
Answered 2020-Oct-28 at 02:41Files required by a published Shiny app should go in a folder named www
. If you've got them in the same folder as app.R, they won't be detected properly. No idea why, honestly, but here's a couple resources that mention it:
QUESTION
I was developing a shiny-app on a Windows machine in Rstudio. Now I need to develop it on a Linux machine and later on will need to deploy it on a server. Because of the need to run the app across platforms, I was looking into some environment control application so that I don't have to tune and reinstall the needed packages manually.
I tried to use Packrat for this purpose. I made a snapshot on my Windows machine, copied and pasted the project to my Ubuntu, reopened the project on RStudio, installed Packrat and the restore of the packages ran automatically. Then I ran into an issue that some of the packages that requires system dependencies were not installed automatically, e.g. rgdal and jqr. Therefore, I had to manually install those system dependencies manually in a terminal (it took me a while because there were about 10 of them that requires extra system dependencies).
I am wondering if there is an easier way to just automatically handle this. Later on, I will need to work with a system administer to deploy the app to the server. I am wondering if Packrat has the capability of automatically installing system dependencies on Linux machine/server. If anyone has encounter this issue before, or have other better options, please let me know!
Thank you!
...ANSWER
Answered 2020-Sep-23 at 20:21Hello and welcome to StackOverflow.
You are facing a question that is actually much harder to tackle than you may think at first---deployment of complex R package dependencies across different operating systems is a truly hard and, truth be told, unsolved problem!
You can of course use packrat
and renv
for R package dependencies and snapshots of particular versions. But this does not do anything for system-level dependencies which are simply taken as "given". So no to just transfering to another box and saying "abracadabra". Sorry!
The closest we all may have gotten to fixing this may be Docker where you can create a portable unit of execution that can be deployed whereever Docker run: Windows, macOS, different Linux flavours, ... as it encodes everything.
QUESTION
I had a parser that worked well in Scala Packrat parser combinators. I would like to try something faster with the Fastparse library. However, it cannot handle left-recursion infinite loops. Is there any standard way to cope with that?
...ANSWER
Answered 2020-Aug-08 at 19:19I don't know much about Fastparse, but I'll try to answer your question nevertheless. Right now, your grammar looks something like this:
QUESTION
I'm new to Docker and I'm trying to understand the following setup.
I want to debug my docker container to see if it is receiving AWS credentials when running as a task in Fargate
. It is suggested that I run the command:
ANSWER
Answered 2020-Jul-08 at 07:01For running a command inside docker container you need to be inside the docker container.
Step 1: Find the container ID / Container Name that you want to debug
docker ps
A list of containers will be displayed, pick one of them
Step 2 run following command
docker exec -it bash
and then enter wait for few seconds and you will be inside the docker container with interactive mode Bash
for more info read https://docs.docker.com/engine/reference/commandline/exec/
QUESTION
I am using the virtualstaticvoid buildpack for heroku, but it is on the heroku-16 stack and only supports up to version 3.4.4 of R. I am after a buildpack that works on the latest stack (heroku-18) and supports at least version 3.6 of R, and has no outdated dependencies. The hmdc buildpack appears to support heroku-18 and version 3.6.0 of R, but requires packrat which is soft deprecated in favour of renv.
...ANSWER
Answered 2020-May-30 at 02:08Some good news, virtual_static_void has been updated so the R buildpack
now uses version 3.6.3
, works on both heroku-18
and heroku-16
stacks, and it supports renv
.
QUESTION
I worked on a historical slavery map shiny app project during 2018 period.
My shiny app whas deployed on shinyapps.io with success. You can have a look to my project here
Today, I want to upgrade my app but unfortunately the UI is not working locally (white screen, no modal window, etc...here)
I download my app bundle from Shinyapps.io to use packrat and isolated packages versions used in 2018 without sucess. It's not clear to me how to do this. In Rstudio in Packages > Packrat > Options project > local repositories field. Do I have to indicate the path of the packrat folder of the bundle?
Here are the packages used in the map
...ANSWER
Answered 2019-Dec-26 at 21:12packrat.int() should take care of all paths. However, I think the problem is the bsModal
function from the shinybs
package. If you comment this part of the code in your app it works.
QUESTION
Goal: I want to install
dssrip
package for R 3.6.0 32-bit on Windows 10 Enterprise.
I have both 32- and 64-bit versions of R 3.6.0 installed. In RStudio (1.2.1522), I set the default version to 32-bit then create new project with packrat
enable. I included the following lines in the .Rprofile
file inside project folder.
ANSWER
Answered 2019-Jun-27 at 09:14Have you tried using RStudio -> Tool -> General, then click on "change" button on top that allows you to change the R-Version. A pull-down menu opens where you can select the 32-bit Version and activate it. You will have to restart RStudio to make it happen, though.
QUESTION
I am trying to develop a sort of form through a shiny app, the idea is that the user fills a specific field (a zoning of medical-development priority) about many geographical places (french districts). Thus I think DT is the best option. I don't want to make the column editable
because I want the user to choose between 4 specific values (the idea of the form is to reduce the free text to be cleaned afterward).
I started to work with the example of YiHui https://yihui.shinyapps.io/DT-radio/ As I work for french users I tried to add an option to customize language to french, but the entire logic broke, I don't know why.
Here is a reprex : (simply comment the line with language = list(...
to make it work).
ANSWER
Answered 2019-Jun-28 at 11:52I can't explain but this works by adding a setTimeout
:
QUESTION
In order to have a better understanding of packrat I've tried to have a look at the provided implementation coming with the paper (I'm focusing on the bind
):
ANSWER
Answered 2019-Jan-25 at 13:52The point here is really that this Packrat parser combinator library is not a full implementation of the Packrat algorithm, but more like a set of definitions that can be reused between different packrat parsers.
The real trick of the packrat algorithm (namely the memoization of parse results) happens elsewhere. Look at the following code (taken from Ford's thesis):
QUESTION
I have been building a docker container for an R application and have continually run into an error with downloading a PDF report. The PDF report function works fine in R on a local machine, but when containerized, it throws the error below. I have tried forcing the install of specific packages, namely Knitr and Rmarkdown as other questions have mentioned, however it is still showing the same error. The file in Chrome downloads simply says "Failed - Server Problem". I have tested the download of a CSV file using the app, which works fine, therefore I believe it's an issue with generating and downloading a markdown PDF report.
I have included the build Dockerfile to assist. Any suggestions would be amazing!
Thanks!
DOCKERFILE:
...ANSWER
Answered 2018-Nov-05 at 09:42Simply changing the filename CASE from tsk.Rmd to TSK.Rmd - reason for this is that testing was always on OSX in an IDE which didn't throw any errors, however when building a container with Ubuntu which is case sensitive, it was unable to find the markdown file.
When building with different operating systems, be sure to check if the system is case sensitive! An easy mistake!
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install packrat
Copy the modules directory /usr/share/packrat/modules
Copy the packrat and aws scripts to somewhere in your PATH (eg: /usr/bin) The aws script is only required if you're using the S3 upload module.
Install the dar utility. It's probably included your distro's package set somewhere.
All global- and module-level configuration is done in packrat.conf. Since this file will likely contain encryption keys or other sensitive data, you should probably make it readable only by root (chmod 600 /etc/packrat.conf). The configuration file is heavily-commented and should be reasonably self-explanatory.
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