LithoGenie | based identification categorization of genes

by Arkadiy-Garber Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | LithoGenie Summary

LithoGenie is a Python library. LithoGenie has no bugs, it has no vulnerabilities and it has low support. However LithoGenie build file is not available. You can download it from GitHub.

Detailed Wiki coming soon!. HMM-based pipeline for functional annotation of genome and metagenome assemblies. HMMs used in this program come from a variety of sources, including TIGRFAMS and Pfam. Twenty-five of the HMMs used here have been created by Karthik Anantharaman (link to relevant article: Some of the HMMs (namely, the ones invovled in iron oxidation and reduction) were designed and calibrated by me.

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Quality

Security

License

Reuse

Support

LithoGenie has a low active ecosystem.

It has 1 star(s) with 0 fork(s). There are no watchers for this library.

It had no major release in the last 6 months.

There are 2 open issues and 0 have been closed. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of LithoGenie is current.

Quality

LithoGenie has 0 bugs and 0 code smells.

Security

LithoGenie has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

LithoGenie code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

LithoGenie does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

LithoGenie releases are not available. You will need to build from source code and install.

LithoGenie has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

It has 2071 lines of code, 19 functions and 1 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed LithoGenie and discovered the below as its top functions. This is intended to give you an instant insight into LithoGenie implemented functionality, and help decide if they suit your requirements.

parse fasta file
cluster a list of integers
Pull item from list .
Return the stability counter .
separate a line of text
Checks if the given list of memory is in FLEET .
removes the item from a list
Removes items from a list or list of strings .
Replace occurrences in a string or list of strings .
removes all elements in a list

Get all kandi verified functions for this library.

LithoGenie Key Features

No Key Features are available at this moment for LithoGenie.

LithoGenie Examples and Code Snippets

No Code Snippets are available at this moment for LithoGenie.

Community Discussions

No Community Discussions are available at this moment for LithoGenie.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install LithoGenie

Note: Two additional arguments are required when running the program with the installation without conda: '-hmm_dir' for the location of the HMM directory and '-R' for the location of the directory that contains the R scripts. Both of these should eb present in the master repository for this program.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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