TUSCAN | Cas9 target-site activity predictor

 by   BauerLab Python Version: Current License: No License

kandi X-RAY | TUSCAN Summary

kandi X-RAY | TUSCAN Summary

TUSCAN is a Python library. TUSCAN has no bugs, it has no vulnerabilities and it has low support. However TUSCAN build file is not available. You can download it from GitHub.

This repository contains the stand-alone TUSCAN program as well as the workflows used to construct the model. TUSCAN model contains the model and associated files. workflow contains the data and scripts used to build the model. Please note that some of the files contained within this repository are large (>100MB). To download using git, users will need to install git-lfs (
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            kandi-support Support

              TUSCAN has a low active ecosystem.
              It has 5 star(s) with 4 fork(s). There are 3 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              TUSCAN has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of TUSCAN is current.

            kandi-Quality Quality

              TUSCAN has no bugs reported.

            kandi-Security Security

              TUSCAN has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              TUSCAN does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              TUSCAN releases are not available. You will need to build from source code and install.
              TUSCAN has no build file. You will be need to create the build yourself to build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed TUSCAN and discovered the below as its top functions. This is intended to give you an instant insight into TUSCAN implemented functionality, and help decide if they suit your requirements.
            • Generate a score for each match
            • Extract features from a protein sequence
            • Count the number of features in a sequence
            • Add a dinucleotide feature to features
            • Write sequences to the output queue
            • Count nucleotide features in a sequence
            • Parses the protein sequence
            • Calculate gc
            Get all kandi verified functions for this library.

            TUSCAN Key Features

            No Key Features are available at this moment for TUSCAN.

            TUSCAN Examples and Code Snippets

            No Code Snippets are available at this moment for TUSCAN.

            Community Discussions

            QUESTION

            Output elements in CSV columns when scraping a website with python
            Asked 2021-Jan-21 at 01:28

            I need to scrape a book web site and save the information (price, code, fees, etc.) in a CSV file as a table, but when I try to save the data in the CSV file, I have the title name repeated several times and the information is vertical, I need to place it horizontally and at the end of the information in a book, I need the next information to be on the bottom line.

            ...

            ANSWER

            Answered 2021-Jan-21 at 00:33

            Python's CSV module might help you. Using the CSV module makes it easy. The only thing you need to do is to append the items to a list and then output them all at once, see my_list in the code below.

            Source https://stackoverflow.com/questions/65819110

            QUESTION

            Dictionary returns undefined when searching by key
            Asked 2021-Jan-19 at 21:33

            I am currently making a small, test website, and I have a function that will add an image to the innerHTML based on the input:

            ...

            ANSWER

            Answered 2021-Jan-19 at 21:32

            I just found out by copying and pasting the console logs, there was an extra space in front of my input text. This drove me crazy. Sorry for posting, but I'll leave it up in case anyone runs into the same thing as me.

            Here's what the input was:

            Source https://stackoverflow.com/questions/65799715

            QUESTION

            List index out of range error when working with the split method
            Asked 2020-Oct-30 at 16:42

            I am coding a book store, and am checking if everything works correctly. I am currently creating a method for employees to add books into the built in Inventory of books written into the file, and am trying to display the information using the split method. When testing the add_book method in the Inventory class, it prints the first book's information, and then gives a list index out of range error. Please help if possible. This is the code -

            ...

            ANSWER

            Answered 2020-Oct-28 at 19:33

            Your list index out of range means that your call to the split() method didn't find anything to split on. Therefore, there wouldn't be an index 1 (no splits, only one index), causing a list index out of range error to be thrown

            Source https://stackoverflow.com/questions/64580058

            QUESTION

            Is there a way to define an object in this code's cart method, without overwriting the previous object?
            Asked 2020-Oct-14 at 13:56

            I am coding a Shopping Website in Python, and am having trouble with the 4th option in the code, the checkout, since if a user tries to checkout without entering any data in, it will give an error, and I'm not sure how to fix this, since if I just make a cart, it will overwrite the data. Here is the code -

            ...

            ANSWER

            Answered 2020-Oct-14 at 13:56

            Right now, you have a couple of problems. The first is that every time you call Cart's add_book function, you overwriting the list of books. The easiest way to fix this is to move cartlist to Cart's __init__ method. You can do this without losing the functionality of Inventory's __init__ with a call to super, like so:

            Source https://stackoverflow.com/questions/64342888

            QUESTION

            512 bytes truncation in GnuCOBOL
            Asked 2020-Jun-04 at 11:39

            I'm using the GnuCOBOL compiler, with OpenCobolIDE I'm creating a virtual timeline But, when I reached 174 lines, it gives this error:

            source text exceeds 512 bytes, will be truncated

            What can I do? I have to reach nearly 2000 lines of code...what am I supposed to do? Thanks a lot!

            Full code below. There are a lot of things here, there are only histoy facts, and you can basically skip all the " display " sections. I added a loop but at a certain line, it simply "breaks" the code.

            ...

            ANSWER

            Answered 2020-Jun-03 at 22:39

            Apparently the maximum length of a single line is 512 characters, and the line 144 has 579 characters

            Source https://stackoverflow.com/questions/62183147

            QUESTION

            Reset form and validation
            Asked 2019-Oct-17 at 12:06

            I have a problem with a dialog modal who don,t want to close even with a function

            I have this code to reset and close the modal, the resetting is ok but nothing close with cancel, I use the resetForm() function I have a form with this structure ( form and rules )

            ...

            ANSWER

            Answered 2019-Oct-16 at 17:37

            In your case use this.$refs.form.resetValidation() for reset the validation after reset

            Source https://stackoverflow.com/questions/58418487

            QUESTION

            Selection on an object in Vue
            Asked 2019-Oct-11 at 15:26

            I have an object like this in my vue data

            ...

            ANSWER

            Answered 2019-Oct-11 at 15:26

            You can use the return-object prop which will return the entire object of the selected item on selection.
            So, add this in v-select tag:

            Source https://stackoverflow.com/questions/58343815

            QUESTION

            Resolve Python Module Error To Enable Web Scraping script?
            Asked 2019-Oct-05 at 17:00

            Using stackoverflow for the first time trying to figure out how to scrape Yelp data and having a hard time. Have set up LXML, beautiful soup, requests, PIP, Python and have added these to the path in system variables yet I am still getting the error below when I try to run code below. Any suggestions?

            File "test2.py", line 4, in from exceptions import ValueError ModuleNotFoundError: No module named 'exceptions'

            ...

            ANSWER

            Answered 2019-Oct-05 at 17:00
            from exceptions import ValueError
            

            Source https://stackoverflow.com/questions/58250469

            QUESTION

            Extract verbs from sentence in R?
            Asked 2019-Jun-19 at 11:15

            Please note that I am aware of Extracting Nouns and Verbs from Text and it doesn't work for me because the function they use doesn't exist in openNLP package.

            Here is my column of strings:

            ...

            ANSWER

            Answered 2019-Jun-19 at 11:15

            you can get it by using udpipe_annotate function from udpipe library:

            Source https://stackoverflow.com/questions/56666096

            QUESTION

            How to write an SQL statement whose result set is unique by two columns?
            Asked 2019-Jan-05 at 23:20

            How can I write an SQL (MYSQL Database) statement that will return a result set which is unique in conjunction with two columns?

            To make my question as simple as possible, let's say I have only two tables images and products. I want to query all the images of a certain set of products that have the string Swatch in the the field, images. This query succeeds with the following SQL using a MYSQL database:

            ...

            ANSWER

            Answered 2019-Jan-05 at 23:09

            You don't need a JOIN to products at all. That might fix your problem.

            Source https://stackoverflow.com/questions/54057050

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install TUSCAN

            You can download it from GitHub.
            You can use TUSCAN like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            CLONE
          • HTTPS

            https://github.com/BauerLab/TUSCAN.git

          • CLI

            gh repo clone BauerLab/TUSCAN

          • sshUrl

            git@github.com:BauerLab/TUSCAN.git

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