outLyzer | efficient Variant-Caller to highlight low allele
kandi X-RAY | outLyzer Summary
kandi X-RAY | outLyzer Summary
outLyzer is a Python library typically used in Healthcare, Pharma, Life Sciences applications. outLyzer has no bugs, it has no vulnerabilities and it has low support. However outLyzer build file is not available. You can download it from GitHub.
Copyright Etienne Muller (2016). outLyzer is a computer program whose purpose is to detect variations, specifically low allele frequency variation, in next generation sequencing data (tumor samples, mosaïc mutation). This software is a system to highlight mutations that must be used with caution. We can not guarantee the accuracy of informations and predictions provided. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. outLyzer version 3.0 16/10/2020. Author: Etienne Muller E-mail: muller.etienne@hotmail.fr Sources:
Copyright Etienne Muller (2016). outLyzer is a computer program whose purpose is to detect variations, specifically low allele frequency variation, in next generation sequencing data (tumor samples, mosaïc mutation). This software is a system to highlight mutations that must be used with caution. We can not guarantee the accuracy of informations and predictions provided. This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. outLyzer version 3.0 16/10/2020. Author: Etienne Muller E-mail: muller.etienne@hotmail.fr Sources:
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Quality
Security
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Support
outLyzer has a low active ecosystem.
It has 10 star(s) with 4 fork(s). There are 2 watchers for this library.
It had no major release in the last 12 months.
There are 0 open issues and 5 have been closed. On average issues are closed in 245 days. There are no pull requests.
It has a neutral sentiment in the developer community.
The latest version of outLyzer is 3.0
Quality
outLyzer has no bugs reported.
Security
outLyzer has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
License
outLyzer does not have a standard license declared.
Check the repository for any license declaration and review the terms closely.
Without a license, all rights are reserved, and you cannot use the library in your applications.
Reuse
outLyzer releases are available to install and integrate.
outLyzer has no build file. You will be need to create the build yourself to build the component from source.
Installation instructions, examples and code snippets are available.
Top functions reviewed by kandi - BETA
kandi has reviewed outLyzer and discovered the below as its top functions. This is intended to give you an instant insight into outLyzer implemented functionality, and help decide if they suit your requirements.
- Launch the calling function
- Cutbed file with cutNb
- Check if input files are missing
- Creates out - lyzer command list
- Launch a pileup analysis function
- Read pileup results from a pileup
- Launch a pileup command for a given chromosome position
- Checks if inputs are in position analysis
- Launch a subprocess for a subprocess
- Launch a pileup command for a BAM file
- Read a pileup input file
- Detect MutationMutations
- Create a bed list from a bed file
Get all kandi verified functions for this library.
outLyzer Key Features
No Key Features are available at this moment for outLyzer.
outLyzer Examples and Code Snippets
No Code Snippets are available at this moment for outLyzer.
Community Discussions
No Community Discussions are available at this moment for outLyzer.Refer to stack overflow page for discussions.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install outLyzer
Before launching outLyzer program, it is preferable to set Samtools path as an environment variable:. Otherwise complete Samtools path must be indicated in outLyzer launching command line.
For one session: $export samtools=/path/to/samtools
Permanantly: write previous command line in .bashrc file
For one session: $export samtools=/path/to/samtools
Permanantly: write previous command line in .bashrc file
Support
For any new features, suggestions and bugs create an issue on GitHub.
If you have any questions check and ask questions on community page Stack Overflow .
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