isa-api | open source ISA metadata tracking tools help to manage
kandi X-RAY | isa-api Summary
kandi X-RAY | isa-api Summary
isa-api is a Python library. isa-api has no bugs, it has no vulnerabilities, it has build file available and it has low support. However isa-api has a Non-SPDX License. You can install using 'pip install isa-api' or download it from GitHub, PyPI.
The open source ISA metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments that employing one or a combination of technologies. Built around the ‘Investigation’ (the project context), Study’ (a unit of research) and ‘Assay’ (analytical measurement) general-purpose Tabular format, the ISA tools helps you to provide rich description of the experimental metadata (i.e. sample characteristics, technology and measurement types, sample-to-data relationships) so that the resulting data and discoveries are reproducible and reusable. To find out more about ISA, see To find out who's using ISA and about the ISA development and user community, see www.isacommons.org. The ISA API aims to provide you, the developer, with a set of tools to help you easily and quickly build your own ISA objects, validate, and convert between serializations of ISA-formatted datasets and other formats/schemas (e.g. SRA schemas). The ISA API is published on PyPI as the isatools package. isatools currently supports Python 3.6+. Authors: The ISA team. License: This code is licensed under the CPAL License. ISA team email: isatools@googlegroups.com. ISA discussion group: Github issue tracker:
The open source ISA metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments that employing one or a combination of technologies. Built around the ‘Investigation’ (the project context), Study’ (a unit of research) and ‘Assay’ (analytical measurement) general-purpose Tabular format, the ISA tools helps you to provide rich description of the experimental metadata (i.e. sample characteristics, technology and measurement types, sample-to-data relationships) so that the resulting data and discoveries are reproducible and reusable. To find out more about ISA, see To find out who's using ISA and about the ISA development and user community, see www.isacommons.org. The ISA API aims to provide you, the developer, with a set of tools to help you easily and quickly build your own ISA objects, validate, and convert between serializations of ISA-formatted datasets and other formats/schemas (e.g. SRA schemas). The ISA API is published on PyPI as the isatools package. isatools currently supports Python 3.6+. Authors: The ISA team. License: This code is licensed under the CPAL License. ISA team email: isatools@googlegroups.com. ISA discussion group: Github issue tracker:
Support
Quality
Security
License
Reuse
Support
isa-api has a low active ecosystem.
It has 31 star(s) with 31 fork(s). There are 8 watchers for this library.
It had no major release in the last 12 months.
There are 45 open issues and 297 have been closed. On average issues are closed in 560 days. There are 5 open pull requests and 0 closed requests.
It has a neutral sentiment in the developer community.
The latest version of isa-api is v0.13.0-rc.2
Quality
isa-api has 0 bugs and 0 code smells.
Security
isa-api has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
isa-api code analysis shows 0 unresolved vulnerabilities.
There are 0 security hotspots that need review.
License
isa-api has a Non-SPDX License.
Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.
Reuse
isa-api releases are available to install and integrate.
Deployable package is available in PyPI.
Build file is available. You can build the component from source.
isa-api saves you 73376 person hours of effort in developing the same functionality from scratch.
It has 81908 lines of code, 2391 functions and 174 files.
It has high code complexity. Code complexity directly impacts maintainability of the code.
Top functions reviewed by kandi - BETA
kandi has reviewed isa-api and discovered the below as its top functions. This is intended to give you an instant insight into isa-api implemented functionality, and help decide if they suit your requirements.
- Exports an analysis
- Print an error message
- Log an informational message
- Parse a string representation of an object
- Convert a nihdcc to an Incident object
- Merge two processes
- Get protocol by name
- Load an ontology file
- Read a file into a memory file
- Augment a study
- Create an ISATab archive of a study
- Add sample metadata
- Argument parser
- Checks that the ontology columns are valid
- Converts a biostab file to anisab format
- Merge a list of contacts
- Check if there are multiple Protocol references in table
- Converts a list of SRA accs to anisab file
- Checks if the protocol parameter used in study
- Merge XML files
- Check that the values in the given configuration field are present
- Retrieve a file or directory
- Create an ontology from a DataFrame
- Check for protocol usage
- Query isatab
- Gets a filtered pandas dataframe from the factors list
Get all kandi verified functions for this library.
isa-api Key Features
No Key Features are available at this moment for isa-api.
isa-api Examples and Code Snippets
No Code Snippets are available at this moment for isa-api.
Community Discussions
Trending Discussions on isa-api
QUESTION
Token validation failed Visa X-pay
Asked 2020-Feb-26 at 10:32
I need to tweak an API https://sandbox.api.visa.com/cybersource/payments/flex/v1/keys?apikey={apikey} I am imitating the official document X-Pay Token,but it fail with "Token validation failed" error.
...ANSWER
Answered 2018-Oct-25 at 19:14QUESTION
Trying to use an async function with npm http-hash
Asked 2017-Feb-18 at 00:20
I am trying to use http-hash module in order to construct an API for my application. I am using AVA as my test runner for my previous test. When I run the "npm test" command, I get this error in my console:
...ANSWER
Answered 2017-Feb-15 at 04:02Using a .babelrc instead may work.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install isa-api
You can install using 'pip install isa-api' or download it from GitHub, PyPI.
You can use isa-api like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
You can use isa-api like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
Support
The ISA-API is still in development. We would be very happy to receive any help and contributions (testing, feature requests, pull requests). Please feel free to contact our development team at isatools@googlegroups.com, or ask a question, report a bug or file a feature request in the Github issue tracker at https://github.com/ISA-tools/isa-api/issues.
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