ITKElastix | ITK Python interface to elastix , a toolbox

by InsightSoftwareConsortium Python Version: v0.16.0 License: Apache-2.0

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kandi X-RAY | ITKElastix Summary

ITKElastix is a Python library. ITKElastix has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install ITKElastix' or download it from GitHub, PyPI.

Provides an [ITK] Python interface to [elastix] a toolbox for rigid and nonrigid registration of images. elastix is open source software, based on the well-known [Insight Toolkit (ITK)] The software consists of a collection of algorithms that are commonly used to solve (medical) image registration problems. The modular design of elastix allows the user to quickly configure, test, and compare different registration methods for a specific application.

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ITKElastix has a low active ecosystem.

It has 126 star(s) with 19 fork(s). There are 21 watchers for this library.

It had no major release in the last 12 months.

There are 40 open issues and 39 have been closed. On average issues are closed in 70 days. There are 7 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of ITKElastix is v0.16.0

Quality

ITKElastix has 0 bugs and 0 code smells.

Security

ITKElastix has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

ITKElastix code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

ITKElastix is licensed under the Apache-2.0 License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

ITKElastix releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

ITKElastix saves you 49 person hours of effort in developing the same functionality from scratch.

It has 157 lines of code, 6 functions and 4 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed ITKElastix and discovered the below as its top functions. This is intended to give you an instant insight into ITKElastix implemented functionality, and help decide if they suit your requirements.

Create a transformation matrix from an iterator .
Compute Jacobian Jacobian .
Create a new Transformix Filter field .

Get all kandi verified functions for this library.

ITKElastix Key Features

No Key Features are available at this moment for ITKElastix.

ITKElastix Examples and Code Snippets

No Code Snippets are available at this moment for ITKElastix.

Community Discussions

Trending Discussions on ITKElastix

How to get transformation affine from ITK registration?

QUESTION

How to get transformation affine from ITK registration?

Asked 2022-Mar-15 at 16:52

Given 3D MRI scans A, B, and C I want to perform an affine (co)registration of B onto A, take the transformation affine matrix of the registration and apply it on C.

My problem is that the affine matrix of the registration transform has the wrong signs. Maybe due to wrong orientation?

The TransformParameters contain 12 values of which the first 9 are the rotation matrix in row-major order and the last 3 are the translation values.

...

ANSWER

Answered 2022-Mar-11 at 19:38

Taking a look at this diff, you might be more interested in the old way of doing it. It directly constructs an ITK transform from 4x4 matrix.

But beware, I think there is a bug somewhere in this code. I added this recently and it decreased test accuracy, which makes me believe there is a bug somewhere in there.

Source https://stackoverflow.com/questions/71441883

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install ITKElastix

Install cross-platform binary Python packages with [pip](https://pypi.org/project/pip/):.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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