taggd | Genetic barcode demultiplexing

by JoelSjostrand Python Version: 0.3.1 License: BSD-3-Clause

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kandi X-RAY | taggd Summary

taggd is a Python library. taggd has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

This is the Python version, which is a generalized, optimized and more up-to-date version of the C++ demultiplexer named "findIndexes" which you can find here See for the peer-reviewed reference to the program. The main idea is to extract the cDNA barcodes from the input file (FASTQ, FASTA or BAM) and then try to find a match in a file with a list of reference barcodes using a kmer-based approach. All the reads that match will be outputted and the barcode and spatial information will be added to each record.

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Quality

Security

License

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Support

taggd has a low active ecosystem.

It has 3 star(s) with 6 fork(s). There are 3 watchers for this library.

It had no major release in the last 12 months.

taggd has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of taggd is 0.3.1

Quality

taggd has 0 bugs and 0 code smells.

Security

taggd has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

taggd code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

taggd is licensed under the BSD-3-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

taggd releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

It has 367 lines of code, 8 functions and 9 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed taggd and discovered the below as its top functions. This is intended to give you an instant insight into taggd implemented functionality, and help decide if they suit your requirements.

Runs the program .

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taggd Key Features

No Key Features are available at this moment for taggd.

taggd Examples and Code Snippets

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Community Discussions

No Community Discussions are available at this moment for taggd.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install taggd

You can download it from GitHub.
You can use taggd like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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