kandi X-RAY | synbio Summary
kandi X-RAY | synbio Summary
synbio is a Python library. synbio has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install synbio' or download it from GitHub, PyPI.
synbio is a library for designing and assembling DNA. Users can design plasmids or libraries and export multi-step build protocols. Input SeqRecords. Output assembly SeqRecords, protocols, plate maps, and robotic picklists. Documentation is available at
synbio is a library for designing and assembling DNA. Users can design plasmids or libraries and export multi-step build protocols. Input SeqRecords. Output assembly SeqRecords, protocols, plate maps, and robotic picklists. Documentation is available at
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Quality
Security
License
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Support
synbio has a low active ecosystem.
It has 9 star(s) with 2 fork(s). There are 6 watchers for this library.
It had no major release in the last 12 months.
There are 4 open issues and 8 have been closed. On average issues are closed in 12 days. There are no pull requests.
It has a neutral sentiment in the developer community.
The latest version of synbio is 0.6.17
Quality
synbio has no bugs reported.
Security
synbio has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
License
synbio is licensed under the MIT License. This license is Permissive.
Permissive licenses have the least restrictions, and you can use them in most projects.
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synbio releases are not available. You will need to build from source code and install.
Deployable package is available in PyPI.
Build file is available. You can build the component from source.
Installation instructions are not available. Examples and code snippets are available.
Top functions reviewed by kandi - BETA
kandi has reviewed synbio and discovered the below as its top functions. This is intended to give you an instant insight into synbio implemented functionality, and help decide if they suit your requirements.
- Parse the contents of the snapgene
- Save the circuit to picklists
- Runs the required steps
- Get all records in this set
- Run the protocol
- Performs gibson representation of a sequence of sequences
- Mutate a junction
- Fix duplicate junction sequences
- Return a list of sequences between two sequences
- Annotates a SeqRecords with DNA sequences
- Get features from sequence
- Return a filtered list of hits
- Cull all features in seq
- Return the Hamiltonian representation of an instruction
- Cluster the IGEM XML file
- Set the meta of the wells
- Return a text representation of the instruction
- Write the simulation to a csv file
- Clone a record set into a list of SeqRecords
- Seeds DNA sequences
- A dictionary containing the input volume
- Create a Gibson library for a sequence of sequences
- Performs gibson representation of sequences
- Write the results to a FASTA file
- Save the protocol
- Return a list of all goldbank records
- Parse all contigs in the SNAPGENEREDIREDIREDINEDIREDIREDIRES
- Read genbank data
Get all kandi verified functions for this library.
synbio Key Features
No Key Features are available at this moment for synbio.
synbio Examples and Code Snippets
synbio,Example
Python
Lines of Code : 47License : Permissive (MIT)
Lines of Code : 47License : Permissive (MIT)
Copy"""Example of a Combinatorial Golden Gate assembly with human and robot output protocols."""
import os
from Bio.SeqIO import parse
from synbio.designs import Combinatorial
from synbio.protocols import GoldenGate
def read_all_records():
gg_dir = synbio,Annotation
PythonLines of Code : 5License : Permissive (MIT)
Lines of Code : 5License : Permissive (MIT)Copyfrom Bio.SeqIO import parse
from synbio.features import annotate
record = next(parse("plasmid.fa", "fasta"))
record_with_features = annotate(record, identity=0.96)
Community Discussions
Trending Discussions on synbio
QUESTION
Pairwise comparison in list of lists taking too long
Asked 2017-Oct-23 at 18:51
I have a list of lists, let's call it thelist, that looks like this:
...ANSWER
Answered 2017-Oct-23 at 18:51First I would recommend making your class hashable which is referenced here: What's a correct and good way to implement __hash__()?
You can then make your list of lists a list of sets by doing:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install synbio
You can install using 'pip install synbio' or download it from GitHub, PyPI.
You can use synbio like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
You can use synbio like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
Support
For any new features, suggestions and bugs create an issue on GitHub.
If you have any questions check and ask questions on community page Stack Overflow .
Find more information at:
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