PGxPOP | PGxPOP -

by PharmGKB Python Version: Current License: MPL-2.0

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | PGxPOP Summary

PGxPOP is a Python library. PGxPOP has no bugs, it has no vulnerabilities, it has build file available, it has a Weak Copyleft License and it has low support. You can download it from GitHub.

PGxPOP

Support

Quality

Security

License

Reuse

Support

PGxPOP has a low active ecosystem.

It has 5 star(s) with 1 fork(s). There are 6 watchers for this library.

It had no major release in the last 6 months.

There are 1 open issues and 1 have been closed. On average issues are closed in 3 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of PGxPOP is current.

Quality

PGxPOP has 0 bugs and 0 code smells.

Security

PGxPOP has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

PGxPOP code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

PGxPOP is licensed under the MPL-2.0 License. This license is Weak Copyleft.

Weak Copyleft licenses have some restrictions, but you can use them in commercial projects.

Reuse

PGxPOP releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

It has 2949 lines of code, 218 functions and 18 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed PGxPOP and discovered the below as its top functions. This is intended to give you an instant insight into PGxPOP implemented functionality, and help decide if they suit your requirements.

Initialize the object from the data
Parse alleles
Return the IUPAC name for the given nt
Clean chr
Run the analysis
Updates the value of an item in a dictionary
Print results and phenotypes
Extract bed fields from a BED file
Return True if chr1 is greater than chr2
Logs a message
Set the instance attributes
Check if the given function is deleterious
Given a haplotype matrix return a dictionary of identical haplotypes
Load data from a json file
Determine high GC content for high GC
Returns True if high quality score is greater than the given range
Checks if two allele is a purine
Parse command line arguments
Extract the rare variants from the definition file
Check if a VCF file is Phasing
Return a dictionary of haplotypes
Check if the variant is deleterious
Parse VCF file
Add alternate build information
Return a dictionary of variants
Return True if alleles are purine

Get all kandi verified functions for this library.

PGxPOP Key Features

No Key Features are available at this moment for PGxPOP.

PGxPOP Examples and Code Snippets

No Code Snippets are available at this moment for PGxPOP.

Community Discussions

No Community Discussions are available at this moment for PGxPOP.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install PGxPOP

You can download it from GitHub.
You can use PGxPOP like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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