atomizer | RNM to RBM translation project | Translation library

by RuleWorld Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(5)Vulnerabilities Install Support

kandi X-RAY | atomizer Summary

atomizer is a Python library typically used in Utilities, Translation applications. atomizer has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

Project for the translation of SBML files into BNGL files. You can find more information about the project here.

Support

Quality

Security

License

Reuse

Support

atomizer has a low active ecosystem.

It has 4 star(s) with 4 fork(s). There are 20 watchers for this library.

It had no major release in the last 6 months.

There are 2 open issues and 3 have been closed. On average issues are closed in 34 days. There are 5 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of atomizer is current.

Quality

atomizer has no bugs reported.

Security

atomizer has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

atomizer does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

atomizer releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed atomizer and discovered the below as its top functions. This is intended to give you an instant insight into atomizer implemented functionality, and help decide if they suit your requirements.

Extract context requirements from a BNG file
Analyze the dependencies of a molecule
Return the maximum number of states in a molecule
Detects dependencies of a molecule
Generates a Bngl Function from the given rule
Logs a log message
Returns the index of item in lst
Transform a molecule into a molecule
Add a value to the dependency graph
Performs the levenshtein analysis
Extend this molecule with another molecule
Return example data
Analyze complex reactions
Read a reaction from a string
Create a BGL from a description
Query BioGrid by name1 and name2
Analyze a species modification
Returns a string representation of reaction
Extracts the composition statistics for a given BioNumber
Normalize a BNGlNamespace object
Analyze a list of redundant bonds
Analyze SBML file
Convert gml text to cyjson
Create a radar ax
Parse the contents of the full XML file
Extract atomic pattern from atoms

Get all kandi verified functions for this library.

atomizer Key Features

No Key Features are available at this moment for atomizer.

atomizer Examples and Code Snippets

No Code Snippets are available at this moment for atomizer.

Community Discussions

Trending Discussions on atomizer

Python Nested Dictionaries Retrieve Key from nested value

Saxon 9, Java, NullPointer from doc-available

How to extend doc() functionality in saxon

How to filter string list in google sheet

Accessing sub-tree that is stored in a variable causes exception

QUESTION

Python Nested Dictionaries Retrieve Key from nested value

Asked 2020-Jun-14 at 05:55

I have a Python dictionary with dictionaries nested heavily within. There are several tiers.

What I am trying to accomplish is a function where I can enter any one of the "subcategories" values, for example, 20003482 or 200000879 and it has to return the first nested subcategory key, so for the above examples, 100003109

I am unsure about the best way to go about this, but I've tried something like

...

ANSWER

Answered 2020-Jun-11 at 23:54

There could be 2 different solutions. The simpler one would be here you know that the subcategories are at a fixed depth, in this case

Source https://stackoverflow.com/questions/62333686

QUESTION

Saxon 9, Java, NullPointer from doc-available

Asked 2020-Mar-13 at 23:43

This is an error seen after fixing the issue in Saxon 9 HE, Java - Static errors, XTSE0210, XTSE0165, XPST0017

When invoking an XSLT transform from the following java code

...

ANSWER

Answered 2020-Mar-13 at 23:43

What does the ClasspathResourceURIResolver return when asked to resolve the URI input:request? It seems to have returned a source object that takes Saxon into the code path

Source https://stackoverflow.com/questions/60675550

QUESTION

How to extend doc() functionality in saxon

Asked 2019-Jul-09 at 07:42

I am looking for an extension of doc() functionality currently available in SAXON in a way that it will read XML not from filesystem or from http network, but from memory, where I have those xmls.

The way I want to use it is like:

...

ANSWER

Answered 2019-Jul-09 at 07:42

The standard way of doing this is to write a URIResolver and register it with the transformer. The URIResolver is called, supplying the requested URI, and it is expected to return a Source (which can be a StreamSource, SAXSource, or DOMSource, for example). In this scenario you would typically return a StreamSource wrapping a StringReader which wraps the String containing the XML.

You could equally well use an extension function, but it's probably a little bit more complicated.

Source https://stackoverflow.com/questions/56942922

QUESTION

How to filter string list in google sheet

Asked 2017-Apr-21 at 16:53

I want to filter the string list by other string table.

How to implement blow table?

...

ANSWER

Answered 2017-Apr-21 at 16:53

Try using filter like this:

Source https://stackoverflow.com/questions/43532919

QUESTION

Accessing sub-tree that is stored in a variable causes exception

Asked 2017-Feb-07 at 12:51

I'm using Saxon HE 9.7.0 to transform some XSLT 2.0. In my file I'm trying to select a sub-tree and put it in a variable to use it later on.

Input XML:

...

ANSWER

Answered 2017-Feb-07 at 10:52

To store a copy of nodes you need instead of . value-of creates a text node with the string value(s) of the selected node(s).

Furthermore, some references/paths don't seem to matched, when fixing that I get

Source https://stackoverflow.com/questions/42087269

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install atomizer

These builds are the from the head of master and are not guaranteed to be stable. Use at your own risk.
Linux
OSX
Windows x64
Right click on ./atomizer/build_sbmlTranslator_win.ps1 and select Run with PowerShell.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: