loglikelihood | A library for python to implement the 'Log Likelihood
kandi X-RAY | loglikelihood Summary
kandi X-RAY | loglikelihood Summary
A library for python to implement the 'Log Likelihood' and 'Root Log Likelihood' algorithms. Inspired by the java implementation for Mahout: This library is available from pypi: To install use pip install loglikelihood.
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Top functions reviewed by kandi - BETA
- Compute the log likelihood ratio .
- Compute the entropic matrix .
- Root log likelihood ratio .
- Log of x .
- Calculate the root log - likelihood ratio .
- Compute the entropy of a and b .
- Calculate the entropy of a b .
loglikelihood Key Features
loglikelihood Examples and Code Snippets
Community Discussions
Trending Discussions on loglikelihood
QUESTION
I want to iterate over different matrix blocks based on an index variable. You can think of it as how you would compute the individual contributions to the loglikelihood of the different individuals on a model that uses panel data. That being said, I want it to be as fast as it can be.
I've already read some questions related to it. But none of them answer my question directly. For example, What is the recommended way to iterate a matrix over rows? shows ways to run over the WHOLE bunch of rows not iterating over blocks of rows. Additionally, Julia: loop over rows of matrix (or not) is also about how to iterate over every row again and not over blocks of them.
So here is my question. Say you have X
, which is a 2x9
matrix and an id
variable that indexes the individuals in the sample. I want to iterate over them to construct my loglikelihood contributions as fast as possible. I did it here just by slicing the matrix using booleans, but this seems relatively inefficient given I am for each individual checking the entire vector to see if they match or not.
ANSWER
Answered 2022-Feb-02 at 15:26First, I would recommend you to use vectors instead of matrices:
QUESTION
I want to estimate parameters of negative binomial distribution using MCMC Metropolis-Hastings algorithm. In other words, I have sample:
...ANSWER
Answered 2022-Jan-19 at 21:25Change dnorm
in loglikelihood
to dnbinom
and fix the proposal for prob
so it doesn't go outside (0,1):
QUESTION
I am trying to create a structural equation model that tests the structure of latent variables underlying a big 5 dataset found on kaggle. More specifically, I would like to replicate a finding which suggests that common method variance (e.g., response biases) inflate the often observed high intercorrelations between the manifest variables/items of the big 5 (Chang, Connelly & Geeza (2012).
...ANSWER
Answered 2021-Dec-02 at 11:05First, let me clear up your misinterpretation of the warning message. It refers to the covariance matrix of estimated parameters (i.e., vcov(big5_CFA_cmv)
, from which SEs are calculated as the square-roots of the variances on the diagonal), not to the estimates themselves. Redundancy among estimates can possibly indicate a lack of identification, which you empirically check by saving the model-implied covariance matrix and fitting the same model to it.
QUESTION
I have a data frame where certain columns contain the error and warning messages from Mplus. The text is saved in a weird format, so rather than trying to process each message, I was hoping to simply count the number of messages by counting the occurrences of c(\ in the cell as it is the unique character combination that appears before each warning or error.
For example, one cell contains the messages:
...ANSWER
Answered 2021-Nov-19 at 07:32You can try either reducing the part to be counted like in my comment
QUESTION
I'm trying to include a black box likelihood function in a pymc3 model. This likelihood function just takes a vector of parameter values and returns the likelihood (all data is already included in the function).
So far I've been following this guide and have modified the code as follows to accommodate the fact my model only has one parameter k.
...ANSWER
Answered 2021-Nov-05 at 09:42As per the comments I checked out this thread and discovered that pm.potential really was the cleanest way to achieve black-box likelihood. Modifying the code above as follows did the trick:
QUESTION
I have a function that takes in lambda and a data sample, and finds the corresponding log-likelihood value for each data point:
...ANSWER
Answered 2021-Oct-15 at 05:42If you only want to check which of the provided lambda's returns the best fit you can do
QUESTION
I'm performing Data Science and am calculating the Log Likelihood of a Poisson Distribution of arrival times.
...ANSWER
Answered 2021-Oct-03 at 03:02Seems perfectly Pythonic to me; but since numpy
is already here, why not to vectorize the whole thing?
QUESTION
I am trying to run the code below in VS Code for Julia (or directly on Julia). It is a simple example that computes the Maximum Likelihood estimator of the mean and the variance of a normal distribution (source):
...ANSWER
Answered 2021-Sep-12 at 03:30This has been cross-posted on the Julia discourse, we'll continue to debug it there: https://discourse.julialang.org/t/cant-run-simple-jump-example/67938
It's either:
- An issue in VS-Code (although "when I run it directly in Julia" may rule this out)
- An issue with Ipopt, which is either due to it installing an old version, or a weird incompatibility with this user's system
Either way, this is likely hard to debug.
QUESTION
I am trying to calibrate a model using pykalman and the scipy optimiser. For some reasons scipy seem to think that my input is a masked array, but it is not. I have added the code below:
...ANSWER
Answered 2021-May-25 at 07:20I found the solution, which involves a small change in the utils.py file in the pykalman library (line 73):
QUESTION
I was trying to evaluate a customized function over every point on an n-dimensional grid, after which I can marginalize and do corner plots.
This is conceptually simple but I'm struggling to find a way to do it efficiently. I tried a loop regardless, and it is indeed too slow, especially considering that I will be needing this for more parameters (a1, a2, a3...
) as well. I was wondering if there is a faster way or any reliable package that could help?
EDITS: Sorry that my description of myfunction
hasn't been very clear, since the function takes some specific external data. Nevertheless here's a sample function that demonstrates it:
ANSWER
Answered 2021-Apr-28 at 14:53Vectorising that loop won't save you any time and in fact may make things worse.
Instead of looping through a1_array
and a2_array
to create pairs, you can generate all pairs from the get go by putting them in a 100x100x2 array. This operation takes an insignificant amount of time compared to python loops. But when you're actually in the function and you're broadcasting your arrays so that you can do your calculations on data, you're now suddenly dealing with 100x100x2x500x500 arrays. You won't have memory for this and if you rely on file swapping it makes the operations exponentially slower.
Not only are you not saving any time (well, you do for very small arrays but it's the difference between 0.03 s vs 0.005 s), but with python loops you're only using a few 10s of MB of RAM, while with the vectorised approach it skyrockets into the GB.
But out of curiosity, this is how it could be vectorised.
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Install loglikelihood
You can use loglikelihood like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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