outrigger | de novo * alternative splicing database

by YeoLab Python Version: Current License: BSD-3-Clause

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | outrigger Summary

outrigger is a Python library. outrigger has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. However outrigger has 2 bugs. You can download it from GitHub.

Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

Support

Quality

Security

License

Reuse

Support

outrigger has a low active ecosystem.

It has 48 star(s) with 21 fork(s). There are 34 watchers for this library.

It had no major release in the last 6 months.

There are 41 open issues and 27 have been closed. On average issues are closed in 146 days. There are 3 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of outrigger is current.

Quality

outrigger has 2 bugs (1 blocker, 0 critical, 1 major, 0 minor) and 46 code smells.

Security

outrigger has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

outrigger code analysis shows 0 unresolved vulnerabilities.

There are 2 security hotspots that need review.

License

outrigger is licensed under the BSD-3-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

outrigger releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

outrigger saves you 1892 person hours of effort in developing the same functionality from scratch.

It has 4171 lines of code, 318 functions and 35 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed outrigger and discovered the below as its top functions. This is intended to give you an instant insight into outrigger implemented functionality, and help decide if they suit your requirements.

Get the neighboring exons from a junction
Extract exons from a junction
Unify two strand values
Checks if junction between junction1 and junction2
Does this interval overlap?
Create the graph
Finds the splice events in the event graph
Execute the junction
Get metadata for a splicing event
Prints help and exits
Create a gffutils database
Creates a splice junction dictionary
Read a Jupyter output file
Add exons and junction ids and junction ids
Make a splice graph for alternative events
Dictionary of alternative events
Return a dictionary mapping event names to event types
Print the completion progress

Get all kandi verified functions for this library.

outrigger Key Features

No Key Features are available at this moment for outrigger.

outrigger Examples and Code Snippets

No Code Snippets are available at this moment for outrigger.

Community Discussions

Trending Discussions on outrigger

Dimensional Modeling - Outrigger dimension for geography

InvalidArgument topicName does not match projects/outrigger-170662/topics/gmail

Recursive CTE instead of scalar function

QUESTION

Dimensional Modeling - Outrigger dimension for geography

Asked 2021-Mar-02 at 16:30

Currently, I'm working on dimensional modeling and have a question in regards to an outrigger dimension. The company is trading and acts as a broker between customer and supplier.

For a fact table, "Fact Trades", we include dimCustomer and dimSupplier. Each of these dimensions have an address.

My question is if it is correct to do outrigger dimensions that refer to geography. This way we can measure how much we have delivered from an origin and delivered to a city. dimensional model

I am curious to what is best practice. I hope you can help to explain how this should be modelled correctly and why.

Hope my question was clear and that I have posted it the correct place.

Thanks in advance.

...

ANSWER

Answered 2021-Mar-02 at 15:22

I can think of at least 3 possible options; your particular circumstances will determine which is best for you:

If you often filter your fact by geography but without needing company/person information (i.e. how many trades where between London and New York?) then I would create a standalone geography dimension and link it directly to your fact (twice - for customer and supplier). This doesn't also stop you having geographic attributes in your customer/supplier Dims, as a dimensional model is not normalised
If geographic attributes change at a significantly more frequent rate than the customer/supplier attributes, and the customer/supplier Dims have a lot of attributes, then it may be worth creating an outrigger dim for the geographical attributes - as this reduces the maintenance required for the customer/supplier Dims. However, given that most companies/people rarely change their address, this is probably unlikely
Keep the geographical attributes in the customer/supplier Dims. I would probably do this anyway even if also picking option 1 above

Just out of interest - do customer and supplier have significantly different sets of attributes (I assume they are both companies or people)? Is it necessary to create separate Dims for them?

Source https://stackoverflow.com/questions/66440215

QUESTION

InvalidArgument topicName does not match projects/outrigger-170662/topics/gmail

Asked 2018-Feb-26 at 20:53

I am using Node.js and the googleapis package. Along with passport for authentication.

When I run this code on my Node.JS app:

...

ANSWER

Answered 2018-Feb-26 at 20:53

Based on the error message, your actual project ID is outrigger-170622, however in your request you are sending outrigger-170662. It looks like this error is caused by a typo of 662 vs 622. Try fixing this and see if the error goes away.

Source https://stackoverflow.com/questions/48875556

QUESTION

Recursive CTE instead of scalar function

Asked 2018-Feb-15 at 10:31

We have data warehouse and cube which is loaded from Microsoft Dynamics AX Issue is caused by scalar function:

...

ANSWER

Answered 2018-Feb-15 at 09:26

Create another function [dbo].[fn_SplitActivityByLevel_new] which return table with two column Activity and level and accept only @Activity varchar(20),@SplitBy char(1)

Source https://stackoverflow.com/questions/48797635

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install outrigger

You can download it from GitHub.
You can use outrigger like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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