GTG | Source code of Grid-to-Graph : Flexible Spatial
kandi X-RAY | GTG Summary
kandi X-RAY | GTG Summary
Source code of "Grid-to-Graph: Flexible Spatial Relational Inductive Biases for Reinforcement Learning" (AAMAS 2021). In this work, we show that by leveraging the relational graph of a Relational Graph Convolution Network (R-GCN), we can imbue agents with flexible relational inductive biases. Based on this insight, we propose Grid-to-Graph (GTG), a mapping from grid structures to relational graphs that carry useful spatial relational inductive biases when processed through R-GCN.
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Top functions reviewed by kandi - BETA
- Generate a trained model
- Create a Gym instance
- Create buffers
- Write to to_log
- Action function
- Spawn a diver
- Spawn a new entity
- Generate random motors
- Find moves that are closer to agent
- Return a random class
- Display the plot
- Build a VTrace from the given logits
- Initialize the game
- Convert a string to a Clause
- Place a ball onto the world
- Get abstract entities
- Run experiment
- Run actor
- Generates a set of all member assignments
- Perform the forward computation
- Forward computation
- Reset experiment state
- Step one step
- Create a featurize representation of a given task
- Plot a group plot
- Format a task
GTG Key Features
GTG Examples and Code Snippets
Community Discussions
Trending Discussions on GTG
QUESTION
I am trying to install EZTrace which is a tool that aims at generating automatically execution trace from HPC. I downloaded the installation folder from here, https://eztrace.gitlab.io/eztrace/index.html. After extracting it, I found a README file:
...ANSWER
Answered 2021-Jun-08 at 12:40- don't run
autoheader- the project is not setup to use it - the
automakewarning is a warning, not an error.
usually, the simplest way to bootstrap an autotools-project is by running autoreconf -fiv.
that will create a configure script which you need to run in order to create the Makefile.
QUESTION
I had no error. Always refresh cache and local memory.
Resources for Verifying Translations:
[NCBI Protein Translation Tool][1] (Validation)
[Text Compare][2] (Verification)
[Solution Inspiration][3]
300 DNA chars -> 100 protein chars.
...ANSWER
Answered 2021-Mar-31 at 09:38I think the issue is with you mixing up variable names - your translation code appends to protein but you print output_protein which I assume is actually created somewhere else in your code(?). Also, you first edit the variable dna_sequence but iterate over dna which I assume is also defined elsewhere and maybe doesn't match dna_sequence.
After editing the variable names I can use your code to get the same translation as the NCBI tool.
QUESTION
I have a list of pandas data frames that I got applying the groupby function and I want to add to them a new column with the frequency of each kmer. I did that with a loop but I got a message warning that I need to use df.loc[index, col_names]. Here it is a link to one example of the csv file: https://drive.google.com/file/d/17vYbIEza7l-1mFnavGGO1QjCjPdhxG7C/view?usp=sharing
...ANSWER
Answered 2021-Apr-05 at 12:28It's an error related SettingWithCopyWarning. It's important — read up on it here. Usually you can avoid it with .loc and by avoiding repeat-slicing, but in some cases where you have to slice repeatedly you can get around it by ending .copy() to the end of the expression. You can learn when and why this is important via the link. For a more precise answer for how this is emerging from you'll code, you'll need to show us an MRCE of your code.
QUESTION
I'm writing a ChatBot program where, if the ChatBot doesn't have information to answer a question by the user, it asks the user how to answer the question, and then stores it in a txt file. Later, when another question is asked, the information is retrieved from the txt file and the whole thing starts over (or at least is supposed to).
The program works, however, after one query from the user, and I press enter again for a second try, nothing happens anymore.
Here is my code:
...ANSWER
Answered 2021-Feb-21 at 06:34Issue1 :
Initially file doesn't exist and you are not creating it. so it gave following error
QUESTION
As I was bored and wanted to practice my python, I thought I'd write a script that took some genetic code and converted it into the amino acid sequence. It looks through the code one letter at a time and when it sees a certain sequence, starts translating triplets of genetic code into their equivalent amino acid and strings them together until it reaches a triplet of genetic code that doesn't encode an amino acid. The script then goes back to where it started this translation, and restarts iterating through the code until it finds another start sequence.
The script works, up to a point. I started off using a while loop to iterate through the triplets of genetic code after a start sequence, but when it reaches the end of the genetic code, it goes out of range:
...ANSWER
Answered 2021-Feb-24 at 20:38You keep incrementing base and incrementing l but without checking if you've exceeded the length of the rna string. Changing the condition of your while loop to
QUESTION
i have a protein sequence:
...ANSWER
Answered 2021-Jan-04 at 19:54import itertools
list_codons = [('ATT', 'ATC', 'ATA'),
('GAA', 'GAG'),
('GAA', 'GAG'),
('GCT', 'GCC', 'GCA', 'GCG'),
('ACT', 'ACC', 'ACA', 'ACG'),
('CAT', 'CAC'),
('ATG',),
('ACT', 'ACC', 'ACA', 'ACG'),
('CCT', 'CCC', 'CCA', 'CCG'),
('TGT', 'TGC'),
('TAT', 'TAC'),
('GAA', 'GAG'),
('TTA', 'TTG', 'CTT', 'CTC', 'CTA', 'CTG'),
('CAT', 'CAC'),
('GGT', 'GGC', 'GGA', 'GGG'),
('TTA', 'TTG', 'CTT', 'CTC', 'CTA', 'CTG'),
('CGT', 'CGC', 'CGA', 'CGG', 'AGA', 'AGG'),
('TGG',),
('GTT', 'GTC', 'GTA', 'GTG'),
('CAA', 'CAG'),
('ATT', 'ATC', 'ATA'),
('CAA', 'CAG'),
('GAT', 'GAC'),
('TAT', 'TAC'),
('GCT', 'GCC', 'GCA', 'GCG'),
('ATT', 'ATC', 'ATA'),
('AAT', 'AAC'),
('GTT', 'GTC', 'GTA', 'GTG'),
('ATG',),
('CAA', 'CAG'),
('TGT', 'TGC'),
('TTA', 'TTG', 'CTT', 'CTC', 'CTA', 'CTG')]
counter = 0; max_proc = 1000000; list_seq = []
for x in itertools.product(*list_codons):
counter += 1
if counter % max_proc == 0:
#Do your stuff by slice and clear the list
list_seq = []
list_seq.append(x)
print (counter)
print (x)
QUESTION
text = 'hey, c ya nxt week. TTYL n tq'
x = text.replace('ya', 'you').replace('bcs', 'because').replace('nxt', 'next').replace(' n ', ' and ').\
replace('tq', 'thanks').replace('ur', 'your').replace('c', 'see').replace('nah', 'no').\
replace('thx', 'thanks').replace('dope', 'exciting').replace('bruh', 'dude').\
replace('nope', 'no').replace('ppl', 'people').replace('pls', 'please').replace('U', 'you').\
replace('TTYL', 'talk to you later').replace('OMG', 'oh my god').replace('4', 'for').\
replace('24/7', 'on the regular').replace('TBH', 'to be honest').\
replace('YOLO', 'you only live once').replace('ATM', 'at the moment').\
replace('BRB', 'be right back').replace('BTW', 'by the way').replace('GTG', 'got to go').\
replace('IDK', 'I do not know').replace('IKR', 'I know right').\
replace('OMW', 'on my way').replace('tmrw', 'tomorrow')
print('Original text: ', text)
print('Non-shortform text: ', x)
ANSWER
Answered 2020-Nov-26 at 08:48You can use a dictionary
QUESTION
I'm trying to convert a DNA sequence to an amino acid sequence. I have a dictionary of codons:
...ANSWER
Answered 2020-Oct-26 at 02:52if codon_mapping[mySeq[n:n+3]] != '*':
translated += codon_mapping[mySeq[n:n+3]]
if codon_mapping[seq[n:n+3]] == '*':
break
QUESTION
I am able to print the key:value combinations when I do print(d). Now my objective is that when I input a message in im eg. y r u late. It should print back why are you late. The aim is to split the sentence into words and replace it by the associated text value if available otherwise keep the original word
This is for a school assignment and I am just looking for some help on this
This is what a part of my dictionary looks like:
...ANSWER
Answered 2020-Oct-06 at 08:16Is this what you're looking for?
QUESTION
In a python file I have am trying to write an array to a txt file.
This array is at the moment is 87822 long (but it isn't fixed, depending on the input), each position in the array is a 3 letter piece of text (e.g. "gtg").
I am using the below loop to write all of these to output.txt, but it only prints about 87449 of the items in the array.
ANSWER
Answered 2020-Aug-01 at 04:30Why not this loop? It's better.
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pip install -r requirements.txt
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