refsnper | Find closest reference strain to a metagenomic samples

by bfr_bioinformatics Python Version: 1.0.0 License: Non-SPDX

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kandi X-RAY | refSNPer Summary

refSNPer is a Python library. refSNPer has no bugs, it has no vulnerabilities and it has low support. However refSNPer build file is not available and it has a Non-SPDX License. You can download it from GitLab.

{ width: 100px; }. The input (a set of isolate or metagenomic sequences provided as paired fastq files) is mapped to a reference database. The reference database can be automatically generated for user-defined genera or species from draft and/or complete genome sequences available at the NCBI RefSeq database. For each reference genome the coverage and coverage depth (bedtools) as well as the number of putative SNPs (bcftools) are determined. A summary file is generated that outputs the SNP density for each reference genome.

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refSNPer has a low active ecosystem.

It has 0 star(s) with 0 fork(s). There are no watchers for this library.

It had no major release in the last 12 months.

There are 1 open issues and 0 have been closed. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of refSNPer is 1.0.0

Quality

refSNPer has no bugs reported.

Security

refSNPer has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

refSNPer has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

refSNPer releases are available to install and integrate.

refSNPer has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

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refSNPer Key Features

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refSNPer Examples and Code Snippets

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Vulnerabilities

No vulnerabilities reported

Install refSNPer

Install all dependencies using conda.

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For any new features, suggestions and bugs create an issue on GitLab. If you have any questions check and ask questions on community page Stack Overflow .

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