autodiff | Rudimentary automatic differentiation framework | Machine Learning library

 by   bgavran Python Version: Current License: No License

kandi X-RAY | autodiff Summary

kandi X-RAY | autodiff Summary

autodiff is a Python library typically used in Artificial Intelligence, Machine Learning, Deep Learning, Pytorch applications. autodiff has no bugs, it has no vulnerabilities, it has build file available and it has high support. You can download it from GitHub.

Rudimentary automatic differentiation framework
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              autodiff has a highly active ecosystem.
              It has 76 star(s) with 9 fork(s). There are 6 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              autodiff has no issues reported. There are no pull requests.
              It has a positive sentiment in the developer community.
              The latest version of autodiff is current.

            kandi-Quality Quality

              autodiff has 0 bugs and 0 code smells.

            kandi-Security Security

              autodiff has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              autodiff code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              autodiff does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              autodiff releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.
              Installation instructions are not available. Examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi has reviewed autodiff and discovered the below as its top functions. This is intended to give you an instant insight into autodiff implemented functionality, and help decide if they suit your requirements.
            • Plot the computation graph
            • Add an edge between two nodes
            • Add a subgraph to the plot graph
            • Add a node to the graph
            • Decorator to create a checkpoint function
            • Context manager to context manager
            • Calculate the partial derivative
            • Calculate the gradient of the gradients
            • Compute the partial derivative of this node
            • Reduce tensor to_shape
            • Forward computation
            • Evaluate the function
            • Partial partial derivative
            • Softmax
            • Difference of n times
            • Wrap a function in a module
            • The partial derivative of the function
            • Generate next batch
            • Compute the partial derivative of the variable wrt
            • Evaluate the operator
            • Sample text from seed text
            • Perform the forward computation
            Get all kandi verified functions for this library.

            autodiff Key Features

            No Key Features are available at this moment for autodiff.

            autodiff Examples and Code Snippets

            Automatic differentiation with
            pypidot img1Lines of Code : 25dot img1no licencesLicense : No License
            copy iconCopy
            from jax import grad
            import jax.numpy as jnp
            
            def tanh(x):  # Define a function
              y = jnp.exp(-2.0 * x)
              return (1.0 - y) / (1.0 + y)
            
            grad_tanh = grad(tanh)  # Obtain its gradient function
            print(grad_tanh(1.0))   # Evaluate it at x = 1.0
            # prints 0  
            Records the backward computation .
            pythondot img2Lines of Code : 19dot img2License : Non-SPDX (Apache License 2.0)
            copy iconCopy
            def record(self, flat_outputs, inference_args, input_tangents):
                """Record the function call operation.
            
                _DelayedRewriteGradientFunctions supports only first-order backprop tape
                gradients (and then only when graph building). It does not wo  

            Community Discussions

            QUESTION

            Parameters do not converge at a lower tolerance in nonlinear least square implementation in python
            Asked 2022-Apr-17 at 14:20

            I am translating some of my R codes to Python as a learning process, especially trying JAX for autodiff.

            In functions to implement non-linear least square, when I set tolerance at 1e-8, the estimated parameters are nearly identical after several iterations, but the algorithm never appear to converge.

            However, the R codes converge at the 12th inter at tol=1e-8 and 14th inter at tol=1e-9. The estimated parameters are almost the same as the ones resulted from Python implementation.

            I think this has something to do with floating point, but not sure which step I could improve to make the converge as quickly as seen in R.

            Here are my codes, and most steps are the same as in R

            ...

            ANSWER

            Answered 2022-Apr-17 at 14:20

            One thing to be aware of is that by default, JAX performs computations in 32-bit, while tools like R and numpy perform computations in 64-bit. Since 1E-8 is at the edge of 32-bit floating point precision, I suspect this is why your program is failing to converge.

            You can enable 64-bit computation by putting this at the beginning of your script:

            Source https://stackoverflow.com/questions/71902257

            QUESTION

            Custom gradient with complex exponential in tensorflow
            Asked 2022-Mar-27 at 16:33

            As an exercise I am trying to build a custom operator in Tensorflow, and checking the gradient against Tensorflow's autodiff of the same forward operation composed of Tensorflow API operations. However, the gradient of my custom operator is incorrect. It seems like my complex analysis is not correct and needs some brushing up.

            ...

            ANSWER

            Answered 2022-Mar-27 at 16:33

            TensorFlow 2 does not directly computes the derivative of a function of complex variables. It seems that it computes the derivative of a function of a complex variable as the function of the real part and the imaginary part, using Wirtinger calculus. You can also find an explanation here.

            Source https://stackoverflow.com/questions/71631043

            QUESTION

            Julia JuMP making sure nonlinear objective function has correct function signatures so that autodifferentiate works properly?
            Asked 2022-Mar-24 at 07:41

            so I wrote a minimum example to show what I'm trying to do. Basically I want to solve a optimization problem with multiple variables. When I try to do this in JuMP I was having issues with my function obj not being able to take a forwardDiff object.

            I looked here: and it seemed to do with the function signature :Restricting function signatures while using ForwardDiff in Julia . I did this in my obj function, and for insurance did it in my sub-function as well, but I still get the error

            ...

            ANSWER

            Answered 2022-Mar-24 at 05:41

            I found the problem: in my mat_fun the type of the return had to be "Real" in order for it to propgate through. Before it was Float64, which was not consistent with the fact I guess all types have to be Real with the autodifferentiate. Even though a Float64 is clearly Real, it looks like the inheritence isn't perserved i.e you have to make sure everything that is returned and inputed are type Real.

            Source https://stackoverflow.com/questions/71597359

            QUESTION

            Application of Boost Automatic Differentiation fails
            Asked 2022-Mar-17 at 21:33

            I want to use the boost autodiff functionality to calculate the 2nd derivative of a complicated function.

            At the boost help I can take a look on the following example:

            ...

            ANSWER

            Answered 2022-Mar-17 at 21:33

            Functions of interest are to be converted into templates that may accept either double or boost fvar arguments. Note that boost provides custom implementations of trigonometric functions from standard library (such as sin, cos) suitable for fvar:

            Source https://stackoverflow.com/questions/71423561

            QUESTION

            Julia: Zygote.@adjoint from Enzyme.autodiff
            Asked 2022-Feb-15 at 10:30

            Given the function f! below :

            ...

            ANSWER

            Answered 2022-Feb-15 at 10:30

            Could figure out a way, sharing it here.

            For a given function foo, Zygote.pullback(foo, args...) returns foo(args...) and the backward pass (which allows for gradients computations).

            My goal is to tell Zygote to use Enzyme for the backward pass.

            This can be done by means of Zygote.@adjoint (see more here).

            In case of array-valued functions, Enzyme requires a mutating version that returns nothing and its result to be in args (see more here).

            The function f! in the question post is an Enzyme-compatible version of a sum of two arrays.

            Since f! returns nothing, Zygote would simply return nothing when the backward pass is called on some gradient passed to us.

            A solution is to place f! inside a wrapper (say f) that returns the array s

            and to define Zygote.@adjoint for f, rather than f!.

            Hence,

            Source https://stackoverflow.com/questions/71114131

            QUESTION

            Computing hessian with pydrake autodiff
            Asked 2022-Feb-08 at 02:53

            One of Drake's selling points is the easy availability of gradients via AutoDiff, but I'm struggling to see how to easily compute second-order derivatives in pydrake.

            Given a function f(x), I know of two ways to compute the Jacobian. The first way uses the forwarddiff.jacobian helper function, e.g.:

            ...

            ANSWER

            Answered 2022-Feb-08 at 02:53

            The current recommended answer is to use symbolic::Expression instead of AutoDiffXd when you need more than one derivative. While all of our C++ code should work if it was compiled with AutoDiffX to provide second derivatives, we currently don't build those as one of our default scalar types in libdrake.so.

            Source https://stackoverflow.com/questions/71027922

            QUESTION

            What is a "closure" in Julia?
            Asked 2022-Feb-03 at 18:34

            I am learning how to write a Maximum Likelihood implementation in Julia and currently, I am following this material (highly recommended btw!). So the thing is I do not fully understand what a closure is in Julia nor when should I actually use it. Even after reading the official documentation the concept still remain a bit obscure to me.

            For instance, in the tutorial, I mentioned the author defines the log-likelihood function as:

            ...

            ANSWER

            Answered 2022-Feb-03 at 18:34

            In the context you ask about you can think that closure is a function that references to some variables that are defined in its outer scope (for other cases see the answer by @phipsgabler). Here is a minimal example:

            Source https://stackoverflow.com/questions/70969919

            QUESTION

            Unable to check infeasible constraints when using autodiff in PyDrake
            Asked 2022-Jan-14 at 21:21

            I am solving a problem in PyDrake with SNOPT and I get solutions that look reasonable, but when I do result.is_success() it comes back with False, so I am hoping to investigate why it thinks the problem wasn't solved. I assume I have a bad constraint somewhere, so I'm doing this with the following code:

            ...

            ANSWER

            Answered 2022-Jan-14 at 21:21

            I suppose you write your constraint using a python function. I would suggest to write this python function to handle both float and autodiffxd, so something like this

            Source https://stackoverflow.com/questions/70716513

            QUESTION

            Unable to call common numpy functions in pydrake constraints
            Asked 2021-Dec-31 at 04:20

            I am working with an example in pydrake that has a constraint with polar coordinates that includes evaluating the following function:

            ...

            ANSWER

            Answered 2021-Dec-31 at 04:20

            While I'm not familiar with Drake/PyDrake, any autodiffing program requires functions be implemented in a way that their derivatives are known. It seems that PyDrake is inspecting your code, identifying functions it knows autodiff versions of (e.g., np.arctan2) and replacing them with those versions. It looks like this is the list of functions PyDrake has implemented, so you may want to refer to this list rather than use trial and error. Oddly enough, arctan is there as well as arctan2. I think there may be an additional problem here, specifically that arctan(y/x) is not differentiable everywhere, whereas arctan2(x, y) is designed to fix that. See these plots of arctan(y/x) and arctan2(x, y) as examples.

            Regardless, for mathematical reasons you probably want to be using arctan2 to find that angle, unless you know it's restricted to a certain range.

            Source https://stackoverflow.com/questions/70538786

            QUESTION

            Compute partial derivatives with `madness`
            Asked 2021-Dec-14 at 19:31

            The madness packages, as mentioned here, is nice for autodiff in R.

            I would like to compute now a derivative wrt x of a derivative wrt y.

            $\frac{\partial}{\partial x}\frac{\partial}{\partial y}xy$

            how can this be done using madness?

            update: actually here I guess it factors.. maybe this will be ok by just multiplying the two derivatives? Maybe this will only be difficult if x is a function of y.

            ...

            ANSWER

            Answered 2021-Nov-10 at 14:53

            Here's a way using the numderiv function in madness:

            Source https://stackoverflow.com/questions/69885348

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install autodiff

            You can download it from GitHub.
            You can use autodiff like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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