autodiff | Rudimentary automatic differentiation framework | Machine Learning library
kandi X-RAY | autodiff Summary
kandi X-RAY | autodiff Summary
Rudimentary automatic differentiation framework
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- Plot the computation graph
- Add an edge between two nodes
- Add a subgraph to the plot graph
- Add a node to the graph
- Decorator to create a checkpoint function
- Context manager to context manager
- Calculate the partial derivative
- Calculate the gradient of the gradients
- Compute the partial derivative of this node
- Reduce tensor to_shape
- Forward computation
- Evaluate the function
- Partial partial derivative
- Softmax
- Difference of n times
- Wrap a function in a module
- The partial derivative of the function
- Generate next batch
- Compute the partial derivative of the variable wrt
- Evaluate the operator
- Sample text from seed text
- Perform the forward computation
autodiff Key Features
autodiff Examples and Code Snippets
from jax import grad
import jax.numpy as jnp
def tanh(x): # Define a function
y = jnp.exp(-2.0 * x)
return (1.0 - y) / (1.0 + y)
grad_tanh = grad(tanh) # Obtain its gradient function
print(grad_tanh(1.0)) # Evaluate it at x = 1.0
# prints 0
def record(self, flat_outputs, inference_args, input_tangents):
"""Record the function call operation.
_DelayedRewriteGradientFunctions supports only first-order backprop tape
gradients (and then only when graph building). It does not wo
Community Discussions
Trending Discussions on autodiff
QUESTION
I am translating some of my R codes to Python as a learning process, especially trying JAX
for autodiff.
In functions to implement non-linear least square, when I set tolerance at 1e-8, the estimated parameters are nearly identical after several iterations, but the algorithm never appear to converge.
However, the R codes converge at the 12th inter at tol=1e-8 and 14th inter at tol=1e-9. The estimated parameters are almost the same as the ones resulted from Python implementation.
I think this has something to do with floating point, but not sure which step I could improve to make the converge as quickly as seen in R.
Here are my codes, and most steps are the same as in R
...ANSWER
Answered 2022-Apr-17 at 14:20One thing to be aware of is that by default, JAX performs computations in 32-bit, while tools like R and numpy perform computations in 64-bit. Since 1E-8
is at the edge of 32-bit floating point precision, I suspect this is why your program is failing to converge.
You can enable 64-bit computation by putting this at the beginning of your script:
QUESTION
As an exercise I am trying to build a custom operator in Tensorflow, and checking the gradient against Tensorflow's autodiff of the same forward operation composed of Tensorflow API operations. However, the gradient of my custom operator is incorrect. It seems like my complex analysis is not correct and needs some brushing up.
...ANSWER
Answered 2022-Mar-27 at 16:33TensorFlow 2 does not directly computes the derivative of a function of complex variables. It seems that it computes the derivative of a function of a complex variable as the function of the real part and the imaginary part, using Wirtinger calculus. You can also find an explanation here.
QUESTION
so I wrote a minimum example to show what I'm trying to do. Basically I want to solve a optimization problem with multiple variables. When I try to do this in JuMP I was having issues with my function obj not being able to take a forwardDiff object.
I looked here: and it seemed to do with the function signature :Restricting function signatures while using ForwardDiff in Julia . I did this in my obj function, and for insurance did it in my sub-function as well, but I still get the error
...ANSWER
Answered 2022-Mar-24 at 05:41I found the problem: in my mat_fun the type of the return had to be "Real" in order for it to propgate through. Before it was Float64, which was not consistent with the fact I guess all types have to be Real with the autodifferentiate. Even though a Float64 is clearly Real, it looks like the inheritence isn't perserved i.e you have to make sure everything that is returned and inputed are type Real.
QUESTION
I want to use the boost autodiff functionality to calculate the 2nd derivative of a complicated function.
At the boost help I can take a look on the following example:
...ANSWER
Answered 2022-Mar-17 at 21:33Functions of interest are to be converted into templates that may accept either double
or boost fvar arguments. Note that boost provides custom implementations of trigonometric functions from standard library (such as sin, cos) suitable for fvar
:
QUESTION
Given the function f!
below :
ANSWER
Answered 2022-Feb-15 at 10:30Could figure out a way, sharing it here.
For a given function foo
, Zygote.pullback(foo, args...)
returns foo(args...)
and the backward pass (which allows for gradients computations).
My goal is to tell Zygote
to use Enzyme
for the backward pass.
This can be done by means of Zygote.@adjoint
(see more here).
In case of array-valued functions, Enzyme
requires a mutating version that returns nothing
and its result to be in args
(see more here).
The function f!
in the question post is an Enzyme
-compatible version of a sum of two arrays.
Since f!
returns nothing
, Zygote
would simply return nothing
when the backward pass is called on some gradient passed to us.
A solution is to place f!
inside a wrapper (say f
) that returns the array s
and to define Zygote.@adjoint
for f
, rather than f!
.
Hence,
QUESTION
One of Drake's selling points is the easy availability of gradients via AutoDiff, but I'm struggling to see how to easily compute second-order derivatives in pydrake.
Given a function f(x), I know of two ways to compute the Jacobian. The first way uses the forwarddiff.jacobian
helper function, e.g.:
ANSWER
Answered 2022-Feb-08 at 02:53The current recommended answer is to use symbolic::Expression
instead of AutoDiffXd
when you need more than one derivative. While all of our C++ code should work if it was compiled with AutoDiffX
to provide second derivatives, we currently don't build those as one of our default scalar types in libdrake.so
.
QUESTION
I am learning how to write a Maximum Likelihood implementation in Julia
and currently, I am following this material (highly recommended btw!).
So the thing is I do not fully understand what a closure is in Julia nor when should I actually use it. Even after reading the official documentation the concept still remain a bit obscure to me.
For instance, in the tutorial, I mentioned the author defines the log-likelihood function as:
...ANSWER
Answered 2022-Feb-03 at 18:34In the context you ask about you can think that closure is a function that references to some variables that are defined in its outer scope (for other cases see the answer by @phipsgabler). Here is a minimal example:
QUESTION
I am solving a problem in PyDrake with SNOPT and I get solutions that look reasonable, but when I do result.is_success()
it comes back with False
, so I am hoping to investigate why it thinks the problem wasn't solved. I assume I have a bad constraint somewhere, so I'm doing this with the following code:
ANSWER
Answered 2022-Jan-14 at 21:21I suppose you write your constraint using a python function. I would suggest to write this python function to handle both float and autodiffxd, so something like this
QUESTION
I am working with an example in pydrake that has a constraint with polar coordinates that includes evaluating the following function:
...ANSWER
Answered 2021-Dec-31 at 04:20While I'm not familiar with Drake/PyDrake, any autodiffing program requires functions be implemented in a way that their derivatives are known. It seems that PyDrake is inspecting your code, identifying functions it knows autodiff versions of (e.g., np.arctan2
) and replacing them with those versions. It looks like this is the list of functions PyDrake has implemented, so you may want to refer to this list rather than use trial and error. Oddly enough, arctan
is there as well as arctan2
. I think there may be an additional problem here, specifically that arctan(y/x)
is not differentiable everywhere, whereas arctan2(x, y)
is designed to fix that. See these plots of arctan(y/x) and arctan2(x, y) as examples.
Regardless, for mathematical reasons you probably want to be using arctan2
to find that angle, unless you know it's restricted to a certain range.
QUESTION
The madness
packages, as mentioned here, is nice for autodiff in R.
I would like to compute now a derivative wrt x of a derivative wrt y.
$\frac{\partial}{\partial x}\frac{\partial}{\partial y}xy$
how can this be done using madness
?
update: actually here I guess it factors.. maybe this will be ok by just multiplying the two derivatives? Maybe this will only be difficult if x is a function of y.
...ANSWER
Answered 2021-Nov-10 at 14:53Here's a way using the numderiv
function in madness
:
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Install autodiff
You can use autodiff like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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