pybids | Python tools for querying and manipulating BIDS datasets

by bids-standard Python Version: 0.16.5 License: MIT

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | pybids Summary

pybids is a Python library. pybids has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install pybids' or download it from GitHub, PyPI.

PyBIDS is a Python library to centralize interactions with datasets conforming BIDS (Brain Imaging Data Structure) format. For more information about BIDS visit PyBIDS currently supports Python 3 on POSIX operating systems (including Mac OS). Windows is not officially supported, though most PyBIDS functionality will probably work fine.

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Quality

Security

License

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Support

pybids has a low active ecosystem.

It has 187 star(s) with 106 fork(s). There are 23 watchers for this library.

There were 1 major release(s) in the last 12 months.

There are 86 open issues and 370 have been closed. On average issues are closed in 201 days. There are 14 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of pybids is 0.16.5

Quality

pybids has no bugs reported.

Security

pybids has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

pybids is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

pybids releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions are available. Examples and code snippets are not available.

Top functions reviewed by kandi - BETA

kandi has reviewed pybids and discovered the below as its top functions. This is intended to give you an instant insight into pybids implemented functionality, and help decide if they suit your requirements.

Return a dict of cmdclass
Get a list of layout objects
Builds a file query
Extract the versions from the VCS
Sanitize query dtypes
Get a list of layouts
Convert a number to a string
Enword word
Transforms the dataset
Align the variables of the given variables
Check that variables are categorical
Write a pandas DataFrame to a Pandas DataFrame
Create the versioneer config file
Create a predictor from a dataframe
Build contrasts
Compute the regressor
Extract version information from VCS
Returns a list of VariableCollection objects
Convert to dense matrix
Resample a SparseRunVariable
Parse data files into descriptions
Validate BIDS dataset
Write entities to a file
Convert BIDSFile to Pandas DataFrame
Convert collections to pandas DataFrame
Generate a layout
Convert the dataset to a dense matrix

Get all kandi verified functions for this library.

pybids Key Features

No Key Features are available at this moment for pybids.

pybids Examples and Code Snippets

No Code Snippets are available at this moment for pybids.

Community Discussions

Trending Discussions on pybids

Building Singularity recipe from Nipype docker image CommandNotFound

QUESTION

Building Singularity recipe from Nipype docker image CommandNotFound

Asked 2018-May-09 at 17:52

I have the following Singularity container recipe:

...

ANSWER

Answered 2018-May-09 at 17:52

The issue comes down to the way you are activating the environment. Normally, you would do:

Source https://stackoverflow.com/questions/50259231

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pybids

PyBIDS is most easily installed from pip. To install the latest official release:.

Support

Bug reports, feedback, and other contributions to PyBIDS are welcome. To report a bug, request a feature, or raise a technical (non-usage-related) question for discussion, please open an issue on GitHub. Requests for support and questions about usage (where no bug is suspected) should be posted on the NeuroStars forum. For questions about the BIDS specification or BIDS-Validator, please see the corresponding repositories. For general BIDS-related discussion, see the bids-discussion mailing list. Pull requests are always welcome. If you have any doubts about the suitability of a PR, or want to discuss implementation-related issues, feel free to open an issue for discussion.

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