bed_to_tabix | 1000 Genomes in the regions

by biocodices Python Version: Current License: No License

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kandi X-RAY | bed_to_tabix Summary

bed_to_tabix is a Python library. bed_to_tabix has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

bed_to_tabix will download a gzipped VCF file with the 2,504 genotypes from The 1,000 Genomes Project in the regions defined in one or more BED files. The program will specifically handle the BED sorting, the merging of many BEDs, the parallel-downloading of the different chromosome variants with tabix from different URLs (one per chromosome in the BED regions), and it will merge the resulting VCFs in a single gzipped VCF. You end up with a single multi-chromosome multi-sample merged gzipped VCF with all 1KG genotypes in the regions that you want.

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Support

bed_to_tabix has a low active ecosystem.

It has 0 star(s) with 0 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

bed_to_tabix has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of bed_to_tabix is current.

Quality

bed_to_tabix has no bugs reported.

Security

bed_to_tabix has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

bed_to_tabix does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

bed_to_tabix releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

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bed_to_tabix Key Features

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bed_to_tabix Examples and Code Snippets

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Vulnerabilities

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Install bed_to_tabix

Clone this repo and install the package:.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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