DrAC | Extracting Patients ' information from clinical notes

 by   bioinformatics-ua Python Version: 1.0.0 License: GPL-3.0

kandi X-RAY | DrAC Summary

kandi X-RAY | DrAC Summary

DrAC is a Python library. DrAC has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However DrAC build file is not available. You can download it from GitHub.

A solution for extracting Patients' information from clinical notes and exporting it to an OMOP CDM database.
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            kandi-support Support

              DrAC has a low active ecosystem.
              It has 19 star(s) with 3 fork(s). There are 5 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              DrAC has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of DrAC is 1.0.0

            kandi-Quality Quality

              DrAC has 0 bugs and 0 code smells.

            kandi-Security Security

              DrAC has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              DrAC code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              DrAC is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              DrAC releases are available to install and integrate.
              DrAC has no build file. You will be need to create the build yourself to build the component from source.
              Installation instructions are not available. Examples and code snippets are available.
              DrAC saves you 695 person hours of effort in developing the same functionality from scratch.
              It has 1607 lines of code, 81 functions and 24 files.
              It has medium code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed DrAC and discovered the below as its top functions. This is intended to give you an instant insight into DrAC implemented functionality, and help decide if they suit your requirements.
            • Calculate the harmonization of a matrix .
            • Performs post processing .
            • Compute the metrics for the clinical notes
            • Reads the Stanford train .
            • Validate settings .
            • Disambiguate an annotation
            • Builds a matrix from annotations .
            • Help command - line help .
            • Initialize the object .
            • Extracts the span of a text file
            Get all kandi verified functions for this library.

            DrAC Key Features

            No Key Features are available at this moment for DrAC.

            DrAC Examples and Code Snippets

            No Code Snippets are available at this moment for DrAC.

            Community Discussions

            QUESTION

            Add second geom_layer on only one faceted plot with corresponding legend
            Asked 2021-Apr-12 at 13:12

            I'm creating a faceted plot with a first data frame and I add a second geom_point to one of the panel. My problem is I would like to show the corresponding legend for the added point.

            To plot the second geom_point on the panel I want, I created a new data frame with the corresponding value and I modified the River column to plot the new geom_point on the correct panel but then the legend is not correct. I would like to have a blue circle in the River section. I learnt a new way to deal with legend on another post, thanks to the people who replied, but here it doesn't work here since this plot is faceted.

            ...

            ANSWER

            Answered 2021-Apr-12 at 13:12

            Although this does not answer the coding question it may be a solution to the visualisation.

            Source https://stackoverflow.com/questions/67056890

            QUESTION

            How to force facet_wrap to draw last panel in right bottom corner and leave the white gap
            Asked 2021-Apr-09 at 16:04

            I would like to force ggplot to draw the last graph in the right bottom corner and not the left one. I tried several things (similar questions here, here and here) but I don't manage to decide the order of the panels AND the position of the last plot.

            This is the closest I managed to do:

            with this code:

            ...

            ANSWER

            Answered 2021-Apr-01 at 15:23

            I don't know a way to do this naturally with ggplot2 or extension packages. If there is a more straightforward way to do this, I'll gladly hear it. However, you can edit the gtable that your plot produces to get the result you want. For brevity (and because I couldn't run your code without errors), I simplified the example a bit, but it would probably work similarly for your plot. The example also assumes fixed x-axes.

            First, we convert the plot to a gtable. We can inspect the row/column numbers with gtable::gtable_show_layout().

            Source https://stackoverflow.com/questions/66906245

            QUESTION

            Show corresponding legend for second geom_point()
            Asked 2021-Apr-07 at 13:50

            I am plotting three times with geom_point in the same plot but the second and third geom_point don't appear in the legend and I don't understand why. I looked at many posts but I can't find a solution that really works. My 2 original dataframes are different and I would prefer to keep it that way and not join them.

            Either the cross (or the colour) appears on all the legend items or the second geom_point() is not mentionned to the legend. Here's my current code:

            ...

            ANSWER

            Answered 2021-Apr-07 at 13:28

            I hope this is a helpful step forward, but not entirely sure if it completes the plot you're looking for. In essence there are two further steps you should take to get everything in legends and everything in order:

            • Anything you want to appear in the legends should be within each aes() call for each geom_point()
            • using the breaks = argument in the scale_*_manual() calls lets you both specify everything that should be displayed and the order it should be in.

            Working with both of those, this might be the start of what you're looking for:

            Source https://stackoverflow.com/questions/66984409

            QUESTION

            How to create a corresponding and merged legend in ggplot?
            Asked 2020-Apr-29 at 18:40

            I created this scatter plot with ggplot and as you can see I don't manage to create a corresponding legend to the plot:

            • the square should be darkgrey and its text should be "Méthode par transects"
            • the triangle should be light grey and its text should be "Methode par sous-transects".

            I would have like as well, if possible, to put the legend for the dashed line "Seuil" closer to these points.

            Here is my code:

            ...

            ANSWER

            Answered 2020-Apr-29 at 18:40

            First of all: Thanks so much for posting your dataset via dput. It really helps to answer your question and is really appreciated.

            The basic idea is to let ggplot create and combine legends, which it tries to do intelligently. To create a legend in the first place, you put the parameter into an aesthetic (aes()), which you've done already. In your case, you want to combine the shape= and color= aesthetic.

            First of all, make sure they are pointing to the right thing. In your case, the references are not the same (shape= BRI_type, whereas color= factor(BRI_type)), but to ggplot, this is the same thing. The character vector tst_formule$BRI_type will be converted to a factor during the creation of the plot in order to separate shape= based on the levels of that factor. Bottom line, you can remove factor(BRI_type) and just use BRI_type; however, the end result is the same. It's just better practice.

            Remember I mentioned that ggplot tries to combine legends automatically? Well, since color= and shape= are pointed to the same factor (BRI_type, which gets factored before plotting), by default, you will get a combined legend. You can see this for yourself by removing scale_color_manual and scale_shape_manual from your original code:

            Source https://stackoverflow.com/questions/61506589

            QUESTION

            Thruk - templating - Add href when host is member of hostgroup
            Asked 2018-Nov-21 at 12:02

            In the _block.tt its possible to add href when custom_vars_host is present.

            ...

            ANSWER

            Answered 2018-Nov-19 at 08:26

            Same way as the macro

            [% IF host.groups.size > 0 %]

            [% FOREACH group IN host.groups.sort %]

            [% IF group == "metrics-win" %]

            [% END %]

            [% END %]

            [% END %]

            Source https://stackoverflow.com/questions/53334986

            QUESTION

            Is it possible to get the last number generated from ROW_NUMBER in SQL
            Asked 2018-Sep-26 at 11:43

            I currently have such a query inside my stored procedure:

            ...

            ANSWER

            Answered 2018-Sep-26 at 03:27

            just do a @@rowcount after your query

            Source https://stackoverflow.com/questions/52509320

            QUESTION

            Stored Procedure within a Stored Procedure NVARCHAR output value
            Asked 2018-Sep-25 at 07:56

            I have one stored procedure which return a nvarchar value written like that:

            ...

            ANSWER

            Answered 2018-Sep-25 at 07:56

            Use OUTPUT keyword when you call GetLastVouchNumber and pass @newOrdNo as an output parameter. Your GetLastVouchNumber procedure returns information with output parameter.

            Source https://stackoverflow.com/questions/52492591

            QUESTION

            Making two API calls with Retrofit to form one object
            Asked 2018-Aug-24 at 05:26

            I'm writing an app which makes unfortunately requires two API calls to complete one object. One call to TMDB to get a list of movies currently in theaters,and then another one to TMDB with the TMDB ID of each movie to get the IMDB ID.

            I might also later want to make a third call to OMDB to get the data from there as that's the data we're using on the movie page itself.

            I'm new to RXJava and fairly new to Retrofit. I did this the old fashioned way (well, I used OKHTTP) but i'd like to switch to a more elegant version with RXJava and this seems like the perfect use case to me.

            Sample First API Call

            ...

            ANSWER

            Answered 2018-Aug-24 at 02:45

            Do a combineLatest on the three network calls and wrap them in an object, then in subscribe pull the values out into your final object and send it to your presenter or display or other business logic

            Source https://stackoverflow.com/questions/51996635

            QUESTION

            workbooks.close does not work for me
            Asked 2018-Apr-25 at 20:54

            Hope someone can help with my following problem.

            I want to make sure a specific workbook is closed before It gets an update. for that I was planning to start with.

            Private Sub Command1_Click() workbooks("workbookname.XLSM").close Savechanges = False End Sub

            I also tried

            workbooks("workbookname.Xlsm").close

            Both i have run separately and both give me Error code 9.

            The specific file will always be on the desktop of the user.

            I thought it might have something to do with my references so I checked and have the following references turned on. (some for other specific reasons).

            • Visual Basic For Applications
            • Microsoft Access 16.0 Object Library
            • OLE Automation
            • Microsoft DAO 3.6 Object Library
            • Microsoft Excel 16.0
            • Object Library Microsoft Scripting Runtime.

            Really hope someone can help me with this. I've been surfing quite a large number of forums but no where i could find the same problem or solution.

            w.k.r. Drac.

            ...

            ANSWER

            Answered 2018-Apr-25 at 14:04

            You have to check to see if it's open, and reference the open object properly. The function below (which I picked up off SO somewhere), returns a true/false value about the file in particular:

            You would use it as such:

            Source https://stackoverflow.com/questions/50023126

            QUESTION

            Why am I getting Match Error?
            Asked 2017-Dec-11 at 13:09

            I have a txt of sql insert statements like:

            ...

            ANSWER

            Answered 2017-Dec-11 at 12:03

            The main reason for this error is that the text you are splitting starts with the pattern, so the first result will be an empty string:

            Source https://stackoverflow.com/questions/47750382

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install DrAC

            You can download it from GitHub.
            You can use DrAC like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

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