BCAI_kaggle_CHAMPS | Bosch solution to CHAMPS Kaggle competition

 by   boschresearch Python Version: Current License: MIT

kandi X-RAY | BCAI_kaggle_CHAMPS Summary

kandi X-RAY | BCAI_kaggle_CHAMPS Summary

BCAI_kaggle_CHAMPS is a Python library. BCAI_kaggle_CHAMPS has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Below you can find a outline of how to reproduce our solution for the CHAMPS competition. If you run into any trouble with the setup/code or have any questions please contact us at Zico.Kolter@us.bosch.com. Copyright 2019 Robert Bosch GmbH. Code authors: Zico Kolter, Shaojie Bai, Devin Wilmott, Mordechai Kornbluth, Jonathan Mailoa, part of Bosch Research (CR).
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            kandi-support Support

              BCAI_kaggle_CHAMPS has a low active ecosystem.
              It has 106 star(s) with 22 fork(s). There are 11 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 1 open issues and 0 have been closed. On average issues are closed in 107 days. There are 2 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of BCAI_kaggle_CHAMPS is current.

            kandi-Quality Quality

              BCAI_kaggle_CHAMPS has 0 bugs and 0 code smells.

            kandi-Security Security

              BCAI_kaggle_CHAMPS has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              BCAI_kaggle_CHAMPS code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              BCAI_kaggle_CHAMPS is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              BCAI_kaggle_CHAMPS releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.
              BCAI_kaggle_CHAMPS saves you 2899 person hours of effort in developing the same functionality from scratch.
              It has 6263 lines of code, 364 functions and 53 files.
              It has medium code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed BCAI_kaggle_CHAMPS and discovered the below as its top functions. This is intended to give you an instant insight into BCAI_kaggle_CHAMPS implemented functionality, and help decide if they suit your requirements.
            • Auto preprocessing step
            • Compute the weight of a module
            • Create a function to apply weight normNorm
            • Add embedding information to the dataframe
            • Performs a single epoch
            • Logs a string to the log file
            • Calculate the loss of the loss function
            • Generate subgraph filter
            • Automatic preprocessing
            • Convert XYZ to molecule object
            • Add all pairs of molecules
            • Return the ensemble of the given models
            • Load a submission
            • Given a list of n_model_count and a set of n_model_counts to select the best fit for each choice
            • Convert XYZ to molecule
            • Logs a string to a file
            • Remove the parameters from the module
            • Perform a forward computation
            • Compute the weight matrix
            • Forward transformation matrix
            • Create a logging directory
            • Read the XYZ file
            • Predict a single model
            • Load a model
            • Embed embedding
            • Get the dataset from the root directory
            • Write the final output to a final output file
            Get all kandi verified functions for this library.

            BCAI_kaggle_CHAMPS Key Features

            No Key Features are available at this moment for BCAI_kaggle_CHAMPS.

            BCAI_kaggle_CHAMPS Examples and Code Snippets

            No Code Snippets are available at this moment for BCAI_kaggle_CHAMPS.

            Community Discussions

            No Community Discussions are available at this moment for BCAI_kaggle_CHAMPS.Refer to stack overflow page for discussions.

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install BCAI_kaggle_CHAMPS

            We use only the train.csv, test.csv, and structures.csv files of the competition. They should be (unzipped and) placed in the data/ directory. All of the commands below are executed from the src/ directory.
            The config/models.json file contains the following important keys:.
            Very fast prediction: predictor.py fast to use the precomputed results for ensembling.
            Ordinary prediction: predictor.py to use the precomputed checkpoints for predicting and ensembling.
            Re-train models: train.py to train a new model from scratch. See train.py -h for allowed arguments, and config files for each model for the arguments used.
            names: List of the names we will ensemble
            output file: The name of the ensembled output file
            num atom types, bond types, triplet types, quad types: These are arguments to pass to the GraphTransformer instantiator. Note that in the default setting, quadruplet information is not used by GTs.
            model_dir: The directory in models/ associated with each model. Each directory must have graph_transformer.py with a GraphTransformer class (and any modules it needs); config file with the kwargs to instantiate the GraphTransformer class; [MODEL_NAME].ckpt that can be loaded via load_state_dict(torch.load('[MODEL_NAME].ckpt').state_dict()) (to avoid PyTorch version conflict).

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            https://github.com/boschresearch/BCAI_kaggle_CHAMPS.git

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            gh repo clone boschresearch/BCAI_kaggle_CHAMPS

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            git@github.com:boschresearch/BCAI_kaggle_CHAMPS.git

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