MybMonday | MYB transcription factors are one of the largest gene family

by bpucker Python Version: Current License: No License

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MybMonday is a Python library. MybMonday has no bugs, it has no vulnerabilities and it has low support. However MybMonday build file is not available. You can download it from GitHub.

The MYB transcription factors from one of the largest transcription factor families in plants. The characteristic feature of MYBs are repeat units which harbour conserved tryptophan (W) residues with a defined number of interleaved amino acid residues (Dubos et al., 2010). These repeat units determine the names of MYBs. For example, the 'R2R3 MYBs' harbour two MYB repeat units: the R2 and the R3 repeat. Especially the R2R3 clade of the MYB family is expanded in plants. Members of this family are phylogenetically assigned to groups. It is expected that members of a certain group control a specific function or process. Therefore, it is possible to transfer the knowledge about MYBs studied in one plant species to the MYBs identified in a new species. Due to the large number of MYBs, they are involved in numerous processes. Here is a list of the expected functions of MYBs in banana (Musa acuminata): (1) defense/stress response, (2) trichome branching and petal morphogenesis, (3) defense/stress response, (4) glucosinolates/camalexin, (5) suberin, (6) root development, (7) phenylpropanoid/lignin, (8) flower meristem identity, (10) abiotic stress response, flower morphogenesis, and stilbene biosynthesis, (11) photomorphogenesis, (12) anther and tapetum development, (14) axillary meristem and root growth, (15) SCW and lignin, (16) stemen/anther development, phenylpropanoid, SCW, (17) anther and trichome development, (18) SCW and lignin, (20) mucillage, lignin, and stomatal closure, (22) repressors of phenylpropanoid, sinapata, lignin, (23) general flavonoid biosynthesis and trichome development, (24) anthocyanins (monocots), (25) proanthocyanins, (27) flavonoid repressors, (28) trichome development, roothair development, floral organ development, (29) anthocyanins and betalains (dicots), (30) flavonols and phlobaphene, (31) cell cycle regulation, (33) phenylpropanoid and lignin, (34) stamen development, (35) defense and stress response, (36) leaf, shoot, germ morphogenesis, (37) anther development and stress response, (38) embryogenesis and seed maturation, (39) guard cell division and root gravitropism, (40) stress response and hormone signaling, (41) stress tolerance, and (42) cell wall, lignin, seed oil,axillary meristem. The phylogenetic relationship of these MYBs is displayed in Fig. 1. Fig. 1: Phylotenetic tree of the banana (Musa acuminata) MYBs (Pucker et al., 2020). In addition to the R2R3 MYBs, there are also MYB3R (cell cycle control), MYB4R (SNAP complex), and various others. However, these lineages have not expanded substantially in plants. More information about MYBs involved in the regulation of the flavonoid biosynthesis is available through the FlavonoidFriday. Check out the collection of genome-wide MYB investigations. Please get in touch to add entries to this collection.

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It has 10 star(s) with 1 fork(s). There are 5 watchers for this library.

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You can use MybMonday like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.