abstar | VDJ assignment and antibody sequence annotation

by briney Python Version: v0.6.0 License: MIT

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | abstar Summary

abstar is a Python library. abstar has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.

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Quality

Security

License

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Support

abstar has a low active ecosystem.

It has 33 star(s) with 13 fork(s). There are 6 watchers for this library.

It had no major release in the last 12 months.

There are 4 open issues and 12 have been closed. On average issues are closed in 378 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of abstar is v0.6.0

Quality

abstar has 0 bugs and 0 code smells.

Security

abstar has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

abstar code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

abstar is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

abstar releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions are available. Examples and code snippets are not available.

Top functions reviewed by kandi - BETA

kandi has reviewed abstar and discovered the below as its top functions. This is intended to give you an instant insight into abstar implemented functionality, and help decide if they suit your requirements.

Parse arguments
Return the name of a collection
Log the options to stdout
Run test
Concatenate multiple files
Make the directories for the given arguments
Write credentials file
Concatenate logs to a log file
Make a FASTA file from the input file
Return a mapping of regions to amino acid sequences
Get the first region of the region
Fix the split codons based on the split codon
Build the output from a list of vdjs
Return the output of a hadoop table
Copy fastqs from basemount to destination directory
Find the end of the junction
Return the name of the collection
Log the command line options
Return a dictionary of the location of each region
Determine whether the cocktail is sensitive
Generate a fasta file for IMGapped FASTA
Write credentials file
The sequence sequence sequence for each region in the query sequence
Concatenates multiple input files together
Download the base space
Get a list of germs for a given gene
Find deletions in a segment
Find all insertions in a given segment
Perform quality trim
Determines if the cocktail is production
Creates a list of directories

Get all kandi verified functions for this library.

abstar Key Features

No Key Features are available at this moment for abstar.

abstar Examples and Code Snippets

No Code Snippets are available at this moment for abstar.

Community Discussions

Trending Discussions on abstar

Enumerate all words of a language in a sequence

QUESTION

Enumerate all words of a language in a sequence

Asked 2017-Dec-21 at 00:29

I've successfully enumerated all words for the languages Σ={a*} and Σ={a^n b^n} with following approach:

...

ANSWER

Answered 2017-Nov-26 at 01:01

Elegant solution for a two characters alphabet

Since you only have two letters in your alphabet, an elegant solution could be to use binary decomposition of integers (a represents a binary 0 and b represents a 1). Here's the algorithm you could implement:

Source https://stackoverflow.com/questions/47491635

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install abstar

You can download it from GitHub.
You can use abstar like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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