silva | SilVA : Silent Variant Analysis using random forests | Machine Learning library

by buske Python Version: Current License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | silva Summary

silva is a Python library typically used in Artificial Intelligence, Machine Learning applications. silva has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However silva build file is not available. You can download it from GitHub.

SilVA: Silent Variant Analysis using random forests

Support

Quality

Security

License

Reuse

Support

silva has a low active ecosystem.

It has 5 star(s) with 5 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

There are 5 open issues and 3 have been closed. On average issues are closed in 125 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of silva is current.

Quality

silva has no bugs reported.

Security

silva has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

silva is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

silva releases are not available. You will need to build from source code and install.

silva has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed silva and discovered the below as its top functions. This is intended to give you an instant insight into silva implemented functionality, and help decide if they suit your requirements.

Generate a sphinx script script
Splits two examples
Creates a test set of test cases
Read a matrix from a file
Generate training examples
Write examples to file
Create a directory
Try to open a file
Generate overlapping subsets
Read groups from file
Parse command line arguments
Download a genome

Get all kandi verified functions for this library.

silva Key Features

No Key Features are available at this moment for silva.

silva Examples and Code Snippets

No Code Snippets are available at this moment for silva.

Community Discussions

Trending Discussions on silva

How to slice pandas column with index list?

Regex - Include space before only when one OR item is match

How to print the initials with awk

Apache Camel REST endpoint not returning the final body

merging dataset based values of another data set

TS: How to get interface from a dynamically created object

ListItem not rendering data in React native

Angular + Ionic - Using ionic components returns 'not a known element'

how to work with json elements in react native

I cannot deserialize JSON object, it returns null

QUESTION

How to slice pandas column with index list?

Asked 2021-Jun-06 at 14:17

I'm try extract the first two words from a string in dataframe

df["Name"]

...

ANSWER

Answered 2021-Jun-06 at 14:13

df['temp'] = df.Name.str.rpartition().get(0)
df

Source https://stackoverflow.com/questions/67859127

QUESTION

Regex - Include space before only when one OR item is match

Asked 2021-May-22 at 21:07

Is there a way to include a space before an item of Or structure only when match to one of it ? The items can repeat inside string.

REGEX:

...

ANSWER

Answered 2021-May-22 at 21:06

You can use

Source https://stackoverflow.com/questions/67650185

QUESTION

How to print the initials with awk

Asked 2021-May-18 at 13:58

I have this input text file:

...

ANSWER

Answered 2021-May-18 at 13:58

$ cat input
Pedro Paulo da Silva
22 years old
Brazil

Bruce Mackenzie
30 years old
United States of America

Lee Dong In
26 years old
South Korea
$ awk '!a{ printf "%s", $1; 
            for( i = 2; i <= NF; i++ ) printf("%c", $i); 
            printf "\n"; a=1}
        /^$/{a=0}' input
PedroPdS
BruceM
LeeDI

Source https://stackoverflow.com/questions/67578018

QUESTION

Apache Camel REST endpoint not returning the final body

Asked 2021-May-17 at 20:34

I've declared a REST endpoint, which calls another route using direct. In the end of the second route I'm logging the body but it's not the same body returned to the browser.

Here's a small example reproducing the behavior (I'm using Apache Camel with Spring Boot):

...

ANSWER

Answered 2021-May-17 at 20:34

Without the input-file and knowing the concrete URI you called (including given value for path-variable {id}), I can only suspect some issues as follows:

Did you provide an id at the end of the GET-call ?
Why did you convert the JSON ?
Did you test the correct split ? Did you aggregate again ?
Did you want to log each message ?

REST endpoints

You specified the endpoint as GET /entidada/{id}. The {id} is a path-variable.

So let's assume you call GET /entidata/1 with 1 as ID. Then your JSON file is polled (read), unmarshalled to ... ?

JSON unmarshal/marshal

These unmarshal and marshal methods are either used to convert between different data-formats or from data-representation to Java-objects (POJOs) if they are internally used (e.g. to pass to a processor Bean etc.).

I suppose the file dados contains textual data as JSON. So you can simply read this text into a (textual!) message body (like a text-message, compare JMS etc.) and work with it: (a) split by JSON-path, (b) filter by JSON-path, (c) log this JSON result, (d) send it back as HTTP-response to the calling client (e.g. your browser).

What happens on the split?

After this you try to split (assuming you have a JSON-array):

Source https://stackoverflow.com/questions/67308049

QUESTION

merging dataset based values of another data set

Asked 2021-May-17 at 20:07

I have 2 dataframe the data in first is like:

Name Company Model Year KmDriven Variant Engine FuelType Safety AgentResponsible car1 Honda HondaCity 2006 10000 V V6 Diesel 4 car2 Huandai Santro 2008 20000 XL V10 Petrol 3 car3 Tata Altroz 2019 5000 X V6 Diesel 5 car4 Ford Figo 2018 10000 M V6 Petrol 4 car5 Tata Nexon 2020 5000 XL V10 Diesel 4

The second dataset is:

Company Engine FuelType Safety AgentResponsible Honda V6 Diesel 3 Vinod Honda V10 Diesel 3 Vinod Honda V6 Diesel 4 Akash Honda V6 Diesel 5 Akash Tata V6 Diesel 4 Amit Tata V10 Petrol 5 Akash Tata V10 Diesel 4 Amit Huandai V10 Petrol 3 Silva Huandai V10 Diesel 4 Silva Huandai V10 Diesel 5 Silva Ford V10 Diesel 4 Silva Ford V6 Petrol 4 Amit

Based on the second dataset I want to fill the Agent Responsible in the First data set. Both dataset are of different dimensions of rows and columns.

The D1 in actual is 1900x20 and D2 is 395x5.

The dataset 2 have around 320 combinations of the 4 columns to provide a name but same person can represent more than 1 combination as shown in this example.

...

ANSWER

Answered 2021-May-17 at 20:07

TRY:

Source https://stackoverflow.com/questions/67575127

QUESTION

TS: How to get interface from a dynamically created object

Asked 2021-May-17 at 19:19

I have a schema object that contains the typed property that starts empty.

...

ANSWER

Answered 2021-May-17 at 18:59

This is not possible since Typescript "checks" your types at compile time.

"The goal of TypeScript is to help catch mistakes early (before running the code, at compile time) through a type system and to make JavaScript development more efficient." more

At runtime the code that runs is a normal (sorta) javascript code. there are several libraries (typescript-is) that can help you check types at run time, but the common use case doesn't need them.

Source https://stackoverflow.com/questions/67575482

QUESTION

ListItem not rendering data in React native

Asked 2021-May-16 at 13:39

hi im trying to render some user info in my react native page and i dont know why it should render something like this:

list

but instead my output is

list

so my FlatList is working but my ListItem is no rendering any data someone could help me? i dont know if it is a bug with reactnativeelements or so

User data

...

ANSWER

Answered 2021-May-16 at 13:39

At the top in your imports write,

Source https://stackoverflow.com/questions/67556962

QUESTION

Angular + Ionic - Using ionic components returns 'not a known element'

Asked 2021-May-12 at 23:25

I just created an app using Ionic and Angular, but I always get the following error, it doesn't matter if I put the html into the ionic generated "pages" folder or in my newly made page.

Ionic version 5.4.16 Angular version 11.2.13

This is my LoginPage html

...

ANSWER

Answered 2021-May-12 at 22:36

I believe you'll fix it by adding the angular common module with your ionic module

ie: AppModule.ts

Source https://stackoverflow.com/questions/67511720

QUESTION

how to work with json elements in react native

Asked 2021-May-05 at 10:34

Sending data into the API with the following code

...

ANSWER

Answered 2021-May-05 at 04:06

First thing is this is not json this is the array object so if you want data from 1st object in array then you should use this...

Source https://stackoverflow.com/questions/67394947

QUESTION

I cannot deserialize JSON object, it returns null

Asked 2021-Apr-26 at 19:35

I am cathing one API and I cannot deserialize a JSON property and I do not know where is the problem.

So I have an object from convertJSON2CSharp :

...

ANSWER

Answered 2021-Apr-26 at 19:35

The problem is in the models you defined. Base on the JSON your models will be:

Source https://stackoverflow.com/questions/67251710

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install silva

Download SilVA:
Install dependencies:
Preprocess VCF file:
Run models and print highest-scoring synonymous variants:
SilVA is packaged with most of its dependencies. The remaining few can be downloaded and configured by running the 'setup.sh' script from the root directory of this package:. Note: SilVA uses a number of environment variables to communicate important paths and parameters, such as what directory to use for temporary files and what allele frequency threshold to use. SilVA has default settings that should work, but will defer to any settings in your environment (so you can hard-code values by exporting variables in your ~/.bashrc, for example). To see a list of these variables or to change their settings, see the init.sh script.
Download, untar, and unzip the package tarball:
Run the setup script in the package's root directory: