carveme | CarveMe : genome-scale metabolic model reconstruction | 3D Animation library

by cdanielmachado Python Version: 1.6.1 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | carveme Summary

carveme is a Python library typically used in User Interface, 3D Animation applications. carveme has no bugs, it has no vulnerabilities, it has build file available and it has low support. However carveme has a Non-SPDX License. You can install using 'pip install carveme' or download it from GitHub, PyPI.

CarveMe is a python-based tool for genome-scale metabolic model reconstruction.

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Quality

Security

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Support

carveme has a low active ecosystem.

It has 103 star(s) with 50 fork(s). There are 7 watchers for this library.

It had no major release in the last 12 months.

There are 25 open issues and 129 have been closed. On average issues are closed in 66 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of carveme is 1.6.1

Quality

carveme has 0 bugs and 0 code smells.

Security

carveme has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

carveme code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

carveme has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

carveme releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

carveme saves you 479 person hours of effort in developing the same functionality from scratch.

It has 861412 lines of code, 84 functions and 31 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed carveme and discovered the below as its top functions. This is intended to give you an instant insight into carveme implemented functionality, and help decide if they suit your requirements.

Run a single diamond call
Minimize a model
Build an ensemble
Build model id
Run benchmark
Build the models
Load essentiality data
Load Biolog data
Download a BiGG universe
Load reactions
Loads metabolites from a JSON file
Load compartments
Download model specific data
Function to create a GPR table
Get HTTP request
Print progress
Curate a model
Compute missing formulae
Curate the universe
Determine the composition of an element
Run diamond

Get all kandi verified functions for this library.

carveme Key Features

No Key Features are available at this moment for carveme.

carveme Examples and Code Snippets

No Code Snippets are available at this moment for carveme.

Community Discussions

Trending Discussions on carveme

Problems with dynamic input and dynamic output rule

QUESTION

Problems with dynamic input and dynamic output rule

Asked 2018-Nov-20 at 14:32

I have a quick question regarding the use of dynamic wildcards. I have searched the documentation and forums, but have not found a straightforward answer to my query.

Here are the rules that are giving me trouble:

...

ANSWER

Answered 2018-Nov-20 at 14:32

You want to have dynamic in your rule all and the rule where the dynamic output is created but not in your last output.

Here is a working example. Given an input file of species as an example species_example.txt:

Source https://stackoverflow.com/questions/53159761

Community Discussions, Code Snippets contain sources that include Stack Exchange Network