Rosalind | Rosalind Bioinformatics Problems | Machine Learning library
kandi X-RAY | Rosalind Summary
kandi X-RAY | Rosalind Summary
These are my current solutions to the Rosalind Problems. I am very fond of the Biopython toolset and try to apply it where appropriate. As such, implementation of many of these solutions require its' installation. I have tried to annotate my code and notify where installations may be necessary. I generally work with Python 2.7 however I will work towards Python 3.X functionality. I would like to create solutions with other programming languages but primarily these will consist of only python solutions.
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Top functions reviewed by kandi - BETA
- r Reverse substring .
- Set project defaults .
- Combine the minimum number of elements in a set of bks .
- BFS implementation of Rosalind index .
- Reverse permutation .
- Return the longest subsequence of a sequence .
- Reverse permutation .
- Reverse reverse_perm .
- Computes the probability for a given domain .
- Backtrack the given sequence matrix .
Rosalind Key Features
Rosalind Examples and Code Snippets
Community Discussions
Trending Discussions on Rosalind
QUESTION
I have a complex component with some "dynamic" imports.
I recreate my component tree on codesandbox: https://codesandbox.io/s/clever-rosalind-t3cfm?file=/src/App.js:298-302
I have an App.js
file where I have a list of objects. Each object, render a RenderWidget
component.
Inside RenderWidget
, I need to get a "dynamic" comp. (I recreated that with a simple function, but i have more complexity in that part). So I wrapped the comp on useMemo to avoid component re-creation. (useMemo has a console.log to check if the Comp
is re-initializated)
Inside the Comp
, we have a useState declaration with the following initial value:
ANSWER
Answered 2021-Apr-22 at 09:51If parent component props have changed it will re-render all of its children, you can use React.memo
to prevent unnecessary re-render.
I also suggest you to read this article, it's written by the author of the react core team, in addition to memo, there are other ways to prevent re-rendering
QUESTION
I have a ReactJS code (attached at the end of the post) where my objective is to find a good way to be able to "communicate" between some nested elements (I've tried to do a very simple code to explain my idea).
The columns are "hierarchy" based, so you have to active "A) Parent" before being able to active "A) Child 1". The main objective is to be able to "disable" (basically, set the state 'active' into false) an element when:
- Some element of a "different column" is active
- Some element of the same column and "depth" is active
Some examples based on the code:
- Disable 'A) Parent' when 'B) Parent' is turned active.
- Disable 'A) Child 1' when 'A) Child 2' is turned active.
- Disable 'A) Child 1' (and 'A) Parent') when 'B) Parent' is turned active.
In this last example, we are also disabling the "ancestors" (since this "works" as a nested structure, where you have to turn on A) Parent to be able to turn on A) Child X ).
As you can see, the idea is to work on a depth level.. Where when you "enter" in another "path", the current active path should be disabled.
I've been trying some methods, but none of them have worked properly. I think they are "expensive" and zero elegant.
My approaches have been something similar to this:
- Give a "depth var" on each element.
- Set a "current" var (useState) to App (root) and pass the "setCurrent" to each element.
- Use a "useEffect" hook inside each looking for changes on current.
- Then, conditionally try to manage them.
As I have said.. I'm pretty sure there are better methods to do this.. But I can't get with them.
Here is the code (for the example, I've tried to do the most simple setup without depth restriction, but remember that you have to "active" the ancestor before being able to "active" the descendant): https://codesandbox.io/s/optimistic-rosalind-1oykv?file=/src/App.js
...ANSWER
Answered 2021-Apr-21 at 17:43As @Shawn Yap has mentioned in the comments, finally I've opted for using Context Api.
Basically the idea is the following (very simplified):
Create a React Context:
QUESTION
Hello let's take this example :
...ANSWER
Answered 2021-Apr-20 at 16:18When it comes to performance, I always find that vanilla JS is faster than any library implementation. So I always prefer vanilla JS for this reason. Here, a non-lodash.js solution, that places the desired values into the array, though you can simply deep-clone your original array:
QUESTION
I have a simple form and a field to render the value of that input field from that form
...ANSWER
Answered 2021-Apr-08 at 01:19The problem comes from the behavior of the input
event. The instance of InputEvent
comes with the corresponding input element as target
, even if you add a listener on the form element.
So, simply rewrite your code as:
QUESTION
I'm learning Haskell and working on a Hamming distance exercise.
...ANSWER
Answered 2021-Mar-01 at 00:46This error isn't anything to do with your guards - it's much more basic than that.
You have:
QUESTION
Good day guys! I want to do mouseover effect like in this video in my vue project. I tried some code but property transform
changed just once. If someone knows, please help me. thats codesandbox.io code. I copied just a part of my code which doesn't work.
ANSWER
Answered 2021-Jan-31 at 16:54I think better to use the npm library for it with the name vue-kinesis
.
But if you want to use your variant, you need to change line 57:
QUESTION
I have an application where I would like to print the location of the user similar to a breadcrumb. I have a component that I add at the application level and expect it to update with current value or the router.currentRoute
object. However it doesn't seem to be updating as expected.
I'm using the Vue2 Composition api plugin and am trying hard to keep it in a decent state that will make migrating to Vue3 much easier once I'm able. This means I'd like to avoid using the context.$route
object that's available. My attempt currently imports the router directly and wraps the currentRoute
object in a ref()
but that doesn't seem to work.
Here is a CodeSandbox with an application that shows the issue. I have a home page and two additional pages. The text that reads 'Your current location is: Home` should change to the name of the other pages when navigating there, however it does not change at all.
...ANSWER
Answered 2020-Dec-13 at 11:36You could use reactive()
on the router
instance, and then toRef()
on that to get currentRoute
:
QUESTION
Premise:
I am currently working on the following problem:
I must find the index combinations of all occurrences of a substring in a string, where the substring is not necessarily contiguous.
My testing parameters:
...ANSWER
Answered 2020-Nov-21 at 10:28I'm not sure your algorithm could find all solutions even if it would be fixed. I tried this logic instead : Find the initial sequence closest to the left of dna and search all declinations going from right to left recursively. This way the solutions are automatically sorted.
QUESTION
I wanted to disable the check button after it click once and proceeding to next step. I try some other ways like adding the condition in methods but it doesn't work. can anyone guide me? Thank you.
Here is my code:
https://codesandbox.io/s/angry-rosalind-c2dxd?file=/src/App.vue
...ANSWER
Answered 2020-Sep-28 at 06:24
Finish
Lorem ipsum dolor sit amet.
Check
QUESTION
I am trying to solve the "Consensus and Profile" challenge on Rosalind. The challenge instructions are as follows:
Given: A collection of at most 10 DNA strings of equal length (at most 1 kbp) in FASTA format.
Return: A consensus string and profile matrix for the collection. (If several possible consensus strings exist, then you may return any one of them.)
My code is as follows (I got most of it from another user on this website). My only issue is that some of the DNA strands are broken down into multiple separate lines, so they are being appended to the "allstrings" list as separate strings. I am trying to figure out how to write each consecutive line that does not contain ">" as a single string.
...ANSWER
Answered 2020-Apr-18 at 10:37There are a couple of ways that you can iterate a FASTA file as records. You can use a prebuilt library or write your own.
A widely used library for working with sequence data is biopython
. This code snippet will create a list of strings.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
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Install Rosalind
You can use Rosalind like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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