cloudbiolinux | configure virtual machines with tools

by chapmanb Python Version: v1.2.9 License: MIT

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | cloudbiolinux Summary

cloudbiolinux is a Python library. cloudbiolinux has build file available, it has a Permissive License and it has low support. However cloudbiolinux has 19 bugs and it has 1 vulnerabilities. You can download it from GitHub.

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

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Quality

Security

License

Reuse

Support

cloudbiolinux has a low active ecosystem.

It has 251 star(s) with 163 fork(s). There are 26 watchers for this library.

It had no major release in the last 12 months.

There are 1 open issues and 146 have been closed. On average issues are closed in 478 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of cloudbiolinux is v1.2.9

Quality

cloudbiolinux has 19 bugs (6 blocker, 1 critical, 3 major, 9 minor) and 245 code smells.

Security

cloudbiolinux has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

cloudbiolinux code analysis shows 1 unresolved vulnerabilities (0 blocker, 1 critical, 0 major, 0 minor).

There are 145 security hotspots that need review.

License

cloudbiolinux is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

cloudbiolinux releases are available to install and integrate.

Build file is available. You can build the component from source.

cloudbiolinux saves you 5436 person hours of effort in developing the same functionality from scratch.

It has 11396 lines of code, 973 functions and 107 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed cloudbiolinux and discovered the below as its top functions. This is intended to give you an instant insight into cloudbiolinux implemented functionality, and help decide if they suit your requirements.

Install Galaxy protobuf
Get the URL for the bitbucket download
Sets up Galaxy environment variables
Setup user and cloudMan
Create a STAR reference directory
Create an index command
Get the path to export
Install the Linux brew
Determine if there is a Linuxbrew origin
Install GATK
Install covaralign
Install anaconda
Install samtools
Return the index of thehisat2 file
Download the FASTA file
Install Galaxy VCR tools
Download the cosmic VCF files
Install Transproto Pipeline
Install cortex var
Install brew packages
Install protvis
Parse command line arguments
Write Debian package information
Decompress files
Deploys a virtual machine
Launch CloudMan

Get all kandi verified functions for this library.

cloudbiolinux Key Features

No Key Features are available at this moment for cloudbiolinux.

cloudbiolinux Examples and Code Snippets

No Code Snippets are available at this moment for cloudbiolinux.

Community Discussions

No Community Discussions are available at this moment for cloudbiolinux.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install cloudbiolinux

You can download it from GitHub.
You can use cloudbiolinux like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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