PPI | coevolution analysis for identifying protein | Machine Learning library
kandi X-RAY | PPI Summary
kandi X-RAY | PPI Summary
Yin, C. & Yau, S. S.-T. (2017). A coevolution analysis for identifying protein-protein interactions by Fourier transform. PLoS ONE 12(4): e0174862.
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Top functions reviewed by kandi - BETA
- Convert a sequence of DNA sequences into DFT vectors
- Calculates the Hydrophobicity of a sequence sequence
- Get all sequences of a given protein
- Computes the Pearson distance between two sequences
- Compute the mutual distance between two sequences
- Distance between two sequences
- Removes zeros from dista
PPI Key Features
PPI Examples and Code Snippets
Community Discussions
Trending Discussions on PPI
QUESTION
I am trying to compile a tool for my project. I have solved all the problems so far, but i can't find the solution for this problem.
If anyone could give me help, i would appreciate it, Thank you.
NtlScriptEncrypter.cpp
...ANSWER
Answered 2021-Jun-06 at 05:00The solution was: add the project that contains NtlXMLDoc.cpp to my references in explorer of my project, because, they are in the same solution, but are a different project, and idk why through properties didn't worked
QUESTION
i have this code below:
...ANSWER
Answered 2021-Jun-04 at 20:06Decode your bytes like this:
QUESTION
My CodenameOne app needs customized icons for some buttons. Images have to be used.
The iOS version of my app was duly provided of those images in 1x 2x 3x formats.
It seems that the multi-image system of CN1 would beneficiate of the image resources of the Android version of my app.
Indeed XCode 1x, 2x, 3x images could lead to strange assignments of "the closest alternative" as it reads in the CN1 dev guide, I think.
...ANSWER
Answered 2021-May-14 at 03:26We have multi-image that works in a way similar to androids DPI level. They don't use the iOS convention since we support more device resolutions than iOS. This works both in the CSS and designer. See the developer guide on multi-image for more details.
QUESTION
I'm trying to find out average house price data for a postcode area using the HM Land Registry open data SPARQL query via https://landregistry.data.gov.uk/app/qonsole, what the best way to do this if it's for a postcode sector (e.g. GL52)?
The 'transactions in a postcode' example code given on there shows how to search a full postcode and I have attempted to alter the code using STRSTARTS() on the VALUES ? postcode section but it's coming back with an error..
...ANSWER
Answered 2021-May-08 at 16:18Your syntax is wrong I'm afraid. For this type of query, you will need a filter, like:
QUESTION
Scenario
I am developing a random app and recently i encountered a problem. I run a same application on Google pixel 3a xl android emulator and Asus X00TD physical device. And I got to know that in asus phone UI got really changed.
Pixel 3a XL display specs :
Display size : 6.0 inch Resolution : 2160 × 1080 ppi : 402ppi
Asus X00TD display specs :
Display size : 6.0 inch Resolution : 2160 × 1080 ppi : 403ppi
You see It's almost same only ppi is different and i don't think so that will make some big difference. roughly 6 pixels will be affected and that's not gonna change whole UI. I don't know the dpi
resolution of the asus x00td. And I can't find on internet too.
This is the UI difference between pixel 3a xl and asus x00td.
As you can see there's big difference between emulator and physical phone. So, I have 2 questions
There's a way to calculate dpi by function. but, What if I don't have a phone and still want to know dpi res of that phone?
Why there is a big difference between emulator and physical phone?
EDIT
I tried to calculate it on internet but, it gave me 0.0631mm
dot pitch. which i am not able to understant what it is. Also emulator shows that pixel 3a xl has 400dpi
resolution.
So, What is difference between 400dpi
and 0.0631mm dot pitch
?
SOLUTION I TRIED
I tried to emulate the asus device in emulator by setting smallest width to 360dp. Initially it looked same as asus. and emulator was picking xhdpi
file of dimens.xml
. So, I made changes in dimens.xml
of xhdpi
but, asus didn't pick that file. instead it picked xxhdpi
file. Which is used in another device Realme 3 pro. I can't modify xxhdpi
file because it's gonna mess up UI for all the 6+ inch display phones. and at the same time asus is still picking xxhdpi
file and asus's UI is messed up.
Can't find a solution to this.
...ANSWER
Answered 2021-Apr-27 at 16:55these differences are caused by different density bucket set for these devices by manufacturers. from doc:
xhdpi Resources for extra-high-density (xhdpi) screens (~320dpi).
xxhdpi Resources for extra-extra-high-density (xxhdpi) screens (~480dpi).
note that you are somewhere in the middle of these values. looks like Asus decided to configure own Android as xxhdpi
, so interface scales up to bigger UI elements (also uses bigger images), while Google set up xhdpi
qualifier making own interface "more packable" with smaller UI elements and icons
under density qualifiers you can keep e.g. dimen
, so size of margins or thickness of some lines or borders. Especially when you are using many resources with @android
/android.R
prefix, built into system - these are oftenly highly parametrized depending on bucket, e.g. thick list items separator may have 0
height value on ldpi
devices for hidding it out leaving more space for content on such small/poor screen. also different images/drawables are used to draw. put a red dot on icon in top right corner, but only in xxhdpi
folder and you will see that only one device will get this change
also there is an option in developer settings for manipulating "max width", in there you can "change density" and can try how interface of whole system and apps change. bet on Asus is set to ~360 when on Pixel is set to at least 400 (rounding up to xx bucket, as closer to 480)
QUESTION
TL;DR: One ESP32 broadcasts via BLE (already working), another ESP32 listens. I am unable to parse the received advertisements correctly, i.e. can't extract the manufacturer specific data!
Goal: One ESP32 (call A) broadcasts an advertisement containing manufacturer specific data (MSD), which is received by another ESP32 (call B) who prints that data to the console.
I am using the new RISC-V based ESP32C3 which supports Bluetooth 5.0, though everything I do is based on Bluetooth 4.2.
Where I am:
- A can broadcast a valid advertisement (checked with an Ubertooth/Wireshark)
- B receives something from A, though the packet only very loosely corresponds to the (correct) packet received by the Ubertooth.
Code:
Structs used to set up A:
...ANSWER
Answered 2021-Apr-17 at 16:45EIR was introduced a long time ago and was present in Bluetooth 4.0.
You should use %02X
when printing hex strings since that will include leading zeros.
ble_adv
contains only the EIR content, not the whole packet.
EIR uses length, type, value encoding. Your manufacturing data is encoded like this:
4 (length) 0xff (manufacturer data) Hey (content)
Note that the two bytes of the manufacturer data content should be a Bluetooth SIG registered company id.
QUESTION
I am trying to load and see the contents of data which can be downloaded from here. After which I need to analyze it. In this regard, I had already posed on problem, but I could not get any solution.
Now, I went through their label file located here. In that, it is mentioned that
“Will code useful Python based letters to describe each object
/ / see http://docs.python.org/library/struct.html for codes / / formats will comma separated beginning with "RJW," as key then / / {NAME}, {FORMAT}, {Number of dims}, {Size Dim 1}, {Size Dim 2}, ... / / where {FORMAT} is the Python code for the type, i.e. I for uint32 / / and there are as many Size Dim's as number of dimensions. ”
So, I guess one can try python. I do have a working knowledge in python. So, I started with this program which I got from here (for simplicity python file and the data files are in same folder):
...ANSWER
Answered 2021-Mar-19 at 05:32You need to open the file in binary mode.
QUESTION
I would like to use Rest Client to query this endpoint: https://landregistry.data.gov.uk/data/ppi/transaction-record.json.
If you access the base URI https://landregistry.data.gov.uk/data/ppi/transaction-record, you can see that the endpoint can take several query parameters. For instance, this is a valid url: https://landregistry.data.gov.uk/data/ppi/transaction-record.json?propertyAddress.postcode=M40%200JE
Since I am sure this is not a new use case, I would like to know what is the best approach to create a "mapping" between the endpoint I am going to expose and the query parameters I can use to create the URI to be invoked?
In other words, taking the example above, my service would expose something like:
...ANSWER
Answered 2021-Mar-15 at 17:04As far as I know, there isn't anything automatic you can do.
Your endpoint would be:
QUESTION
I am trying to create dataset of multiple networkx graphs in json format. My goal is use to this dataset with labels for supervised training of my network. Networkx can dump json format for single graph. However, I am not sure how to handle multiple graphs in the same json file.
The GraphSage documentation claims that the example at https://github.com/williamleif/GraphSAGE/tree/master/example_data has multiple graphs.
The example_data subdirectory contains a small example of the protein-protein interaction data, which includes 3 training graphs + one validation graph and one test graph.
However, when I import the example-data toy-ppi-G.json into python I am not able to differentiate between different graphs or there is just a single graph. The data from json has following keys:
...ANSWER
Answered 2021-Feb-18 at 09:10The overall idea is that you can represent multiple graphs as disjoint components of one big graph. That's what they do in the GraphSAGE repository and you can do it as well.
You can store your multiple graphs in the same json file: as long as there are no edges between two distinct graphs, the GNN will "see" them as separate as well.
I explain this in the documentation of my library for GNNs, here's a representation of the adjacency and node features matrices, where colors represent distinct graphs:
So to answer your question, simply enumerate your nodes sequentially across graphs and add them to the json file. Keep the same indices to add edges.
QUESTION
I have code I run which is filtering grouped rows so only 1 row is left per group unless multiple rows pass all my filters. This code has already worked fine yesterday. However, today I used downloaded some new packages (that are for analyzing gene enrichment), and since using those my filtering code now gives me a new error:
...ANSWER
Answered 2021-Feb-03 at 18:45The error occurred in the last step of subset
(in tidyverse
, it would be with filter
) though as "UpperSD_Genes" dataset shows 0 rows and thus it is not able to extract values from that column
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Install PPI
You can use PPI like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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