py2cytoscape | Python utilities for Cytoscape and Cytoscape.js

by cytoscape Python Version: 0.7.1 License: MIT

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | py2cytoscape Summary

py2cytoscape is a Python library typically used in User Interface, Neo4j applications. py2cytoscape has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Python utilities for Cytoscape and Cytoscape.js

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Quality

Security

License

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Support

py2cytoscape has a low active ecosystem.

It has 163 star(s) with 47 fork(s). There are 19 watchers for this library.

It had no major release in the last 12 months.

There are 22 open issues and 54 have been closed. On average issues are closed in 169 days. There are 6 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of py2cytoscape is 0.7.1

Quality

py2cytoscape has 0 bugs and 0 code smells.

Security

py2cytoscape has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

py2cytoscape code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

py2cytoscape is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

py2cytoscape releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

py2cytoscape saves you 1850 person hours of effort in developing the same functionality from scratch.

It has 4084 lines of code, 534 functions and 64 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed py2cytoscape and discovered the below as its top functions. This is intended to give you an instant insight into py2cytoscape implemented functionality, and help decide if they suit your requirements.

Maps a visual property
Handle status codes
Check response status code
Send a command to the API
Render a network
Read a table from a file
Load styles from file
Load table data
Return a shallow copy of the object
Returns the mappings for a style
Retrieve a table from the API
Select nodes in a network
R Force a directed network
Compute the pose of a network
Force a directed clustering
Imports the data from the table
Get a specific mapping
Perform a Genemania force force directed graph
Creates a new mappings
Imports data from a file
Update a style
Imports data from a table
Imports an import table
Uses the fruch - rheadman - rheingold algorithm
Perform a kamada network on the given network
Update a mapping

Get all kandi verified functions for this library.

py2cytoscape Key Features

No Key Features are available at this moment for py2cytoscape.

py2cytoscape Examples and Code Snippets

No Code Snippets are available at this moment for py2cytoscape.

Community Discussions

Trending Discussions on py2cytoscape

How do I install Cytoscape on Google Colab?

Cytoscape - Set nodeCustomGraphicsSizeSync and nodeSizeLocked from CyREST

QUESTION

How do I install Cytoscape on Google Colab?

Asked 2020-Sep-11 at 23:04

I'd like to use Cytoscape.js (https://js.cytoscape.org/) on Google Colab. I found here (https://py2cytoscape.readthedocs.io/en/latest/) that this can be done in Jupyter Notebooks, but the documentation isn't very thorough.

Here is the code I ran to try to set up Cytoscape and CyREST (paste each block of code here into a separate cell in Google Colab):

...

ANSWER

Answered 2020-Sep-11 at 23:04

For anyone else who runs into this issue, I learned that instead of using this approach, an easier one is to use ipycytoscape, which makes it much easier to get everything running.

However, the problem with both this approach and the one I described in the question is that Cytoscape relies on some ipywidgets for output, and these aren't supported in Google Colab yet.

You can follow the progress of this issue here: https://github.com/googlecolab/colabtools/issues/60

Source https://stackoverflow.com/questions/62421021

QUESTION

Cytoscape - Set nodeCustomGraphicsSizeSync and nodeSizeLocked from CyREST

Asked 2020-Jan-16 at 16:19

Is there a way to programatically set nodeCustomGraphicsSizeSync and nodeSizeLocked in Cytoscape with the CyRest api ?

They are usually set in the UI by the two checkboxes "Fit Custom Graphics to node" and "Lock node width and height" (see image).

I tried this, which does not work:

...

ANSWER

Answered 2020-Jan-16 at 16:19

There is a way in CyREST, but I'm not sure it's been made available through py2cytoscape. Basically, you need to update the dependencies, which is a different REST endpoint (/{name}/dependencies) and you want to use "enabled" rather than "true". You may want to see if there is an update_dependencies in py2cytoscape (I don't see one after a quick look at the docs). If not, add an issue in github: https://github.com/cytoscape/py2cytoscape

-- scooter

Source https://stackoverflow.com/questions/59756877

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