Optics | optical simulation | Machine Learning library
kandi X-RAY | Optics Summary
kandi X-RAY | Optics Summary
This is a small package of microscopy data processing. Can be used in combination with InControl package or for data analysis. Author: danustc Required package:.
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Top functions reviewed by kandi - BETA
- Retrieve the exposure results for a group
- Returns the phase of the model
- Load a mat file
- Retrieve the PSF
- Visualize a pupil
- Calculate the aberration coords of an observer
- Determine the intersection of a plane line
- Calculates the aberration co - correlation coefficient
- Return the incident vector
- Function for dumbby_by
- Plots a lineplot onto the stack
- Create a slice from a stack
- Calculate the chain intersection
- R Calculates the reflection of the reflection vector
- Plot a PSF onto a plane
- Compute the CRL coefficient
- Set zern mode
- Convert modulations to si images
- Calculate the PSF lens scan
- Read a single segment
- Load all pupil functions in a folder
- Calculate the PSF for a given modulation
- Load FWHM files
- Create a cross plot
- Load PSF files in folder
- Visualize a PUPIL image
- Returns the magnetic plane modulus
Optics Key Features
Optics Examples and Code Snippets
Community Discussions
Trending Discussions on Optics
QUESTION
Issue:
I have a code in R that extracts monthly sea surface temperature (SST) values from a single Aqua Modis netCDF file (see below). However, I have a batch of 59 Aqua Modis netCDF files in one folder.
Aim:
My aim is to extract the variable's longitude, latitude, and SST from every netCDF file across all 59 netCDF files, convert them into raster files using the function stack::raster(), and then process these files.
My data frame has 650 rows, which are dolphin IDs. I would like to extract the average SST for each dolphin ID over the time period of 2016-2021. Once I have extracted the average value SST per dolphin ID, I would then like to write these values into a .csv file named as a column called ' Average_SST'.
Unfortunately, I cannot share my data because of ownership issues.
I am a complete novice at spatial analysis and I have been trying to solve this conundrum for nearly 4 days by watching YouTube, and reading tutorials and Stack Overflow. I now feel really confused and I believe I will have to loop through all the files to achieve my objective.
If anyone can help, I would like to thank you in advance.
R-code:
Open all 59 Aqua Modis netCDF files from their folder
...ANSWER
Answered 2022-Apr-08 at 20:36You seem to misunderstand what a RasterStack
or SpatRaster
object is. You printed SST_brick
and it clearly shows that it knows about the longitude and latitudes. You do not need to anything else.
With
QUESTION
Issue
I have a batch of 70+ raster files with the object name 'ncin_SST' that I created using the function stack::raster() in the raster package. I want to change the coordinate reference system (CRS) WG84/34N.
My ultimate aim is to interpolate the point data (dolphin IDs) in a shapefile to obtain the sea surface temperature (SST) values from each individual raster file within the stack of 70+ rasters.
The source of the raster files are multiple Aqua Modis netCDF files contained in one folder in my documents and I downloaded the data from the 'Ocean Color Project' from NASA. My goal is to extract the average SST per ID over the time period across all 70+ raster files from 2016-to 2021.
Firstly, I need to ensure that the shapefile and raster files have the same CRS and I have tried various different methods to achieve this output; however, unsuccessfully.
Unfortunately, I cannot share my data online due to ownership of the data.
Many thanks in advance if anyone can help with this error message.
R-code:
...ANSWER
Answered 2022-Apr-08 at 17:31To open a ncdf file with raster data you can simply do
QUESTION
I'm trying to cluster time series. I also want to use Sklearn OPTICS. In the documentation it says that the input vector X should have dimensions (n_samples,n_features). My array is on the form (n_samples, n_time_stamps, n_features). Example in code further down.
My question is how I can use the Fit-function from OPTICS with a time series. I know that people have used OPTICS and DBSCAN with time series. I just can't figure out how they have implemented it. Any help will be much appreciated.
...ANSWER
Answered 2022-Apr-02 at 14:40Given the following np.array as an input:
QUESTION
I have a function called:
...ANSWER
Answered 2022-Mar-19 at 18:11I'm not familiar with the idioms for that package, but I'd be tempted to use castOptic equality
to turn the identity Iso
into a Prism
. That seems to get the idea across pretty well. However, I would expect that in most contexts you wouldn't actually need to convert it to a Prism
; you can presumably use polymorphic functions (like preview
and review
) that will accept an Iso
as well as a Prism
.
In your case, I suspect the right approach would be to write something like
QUESTION
I'm unable to automatically derive instances using DerivingVia
on any type that uses types from optics-core
like Prism'
; the error I get from compiler is:
ANSWER
Answered 2022-Mar-15 at 23:46Generally speaking, profunctor optics (such as those used in the lens
and optics
packages) aren't directly coercible. Roughly speaking, the internal representation of a prism is something like:
QUESTION
A type Prism' s a = Prism s s a a
(hackage) can be thought of as a relation between some structure s
and its member a
, such that you can always produce the structure from the member (a -> s
), but can only optionally retrieve the member from the structure (s -> Maybe a
).
This model is helpful in relating a sum type to one of its constructors ... as well as (more relevant here) in route encoding and decoding. If s
is the encoded route URL, and a
is the route type, then we have a -> s
representing the encoding function (always succeeds), and s -> Maybe a
representing the decoding function (can fail).
Now, on to these pairs of functions, I want to add a "context" argument that is to be used in the encoding and decoding process (imagine that the decoding process needs to "look up" some database before successfully producing a relevant route). Basically:
...ANSWER
Answered 2022-Mar-15 at 15:18I'm with @HTNW. You should just be able to define:
QUESTION
I have 2 svg animations on the same page. They are each supposed to play on hover, and when the mouse leaves, they are to finish their infinite loop and stop. This works fine, unless I move from one directly to the other. The one I moved from continues to play until I move away from the second one. How can I make the first one stop when my mouse is on the second one? Below was my attempt.
Here is a link to my codepen: https://codepen.io/ericsayag/pen/GROJVdp
...ANSWER
Answered 2022-Feb-24 at 19:59Just call remove on mouseleave.
I've removed some of the javascript that seemed non-functional and refactored it to remove the duplication.
QUESTION
I want to know which way is better to model TDE with MarkLogic.
We have XML documents with many different DateTime fields. Most of the time (99.99%), the timestamp part is of no biz use. I guess the remaining 0.01% use case is for data problem investigation like when this happened.
TDE is neat and easy to expose document data to external BI tools via ODBC. All the columnar-type of modem BI tools (Power BI) prefer separating the Date and Timestamp fields from one single Datetime field. That will improve the BI tool performance significantly.
There are two options to do that.
Create two different fields in TDE from the same field. See the below screenshot. Most of the time, use Date type TDE field only.
Create only one DateTime field in TDE and use type casting in OPTICS API or SQL (ML version of favour)
Which way is better?
...ANSWER
Answered 2022-Feb-21 at 21:55I would say model the data as you plan to use it. In your case, adding the extra TDE field. A few points:
It should compress well.. Only one unique value per day per forest.
MarkLogic is a clustered database. Queries are resolved per forest, then Per node and then on the evaluator node. You should always be careful about filter, sort, join on any dynamic value since sometimes to resolve the items, more data has to be pushed to the evaluator node. Storing the data as you plan to use it helps minimize the risk of suboptimal queries in general, but even more so on a clustered database.
QUESTION
here is a puzzle that I keep on bumping into and that, I believe, no previous SO question has been addressing: How can I best use the lens
library to set or get values within a State
monad managing a nested data structure that involves Map
s when I know for a fact that certain keys are present in the maps involved?
ANSWER
Answered 2022-Feb-09 at 11:43If you are sure that the key is present then you can use fromJust
to turn the Maybe User
into a User
:
QUESTION
im investigating the io.arrow.kt functional programming library in my current android project.
im having difficulty in configuring the optics module that employs ksp for source code generation
my project gradle
resembles this
ANSWER
Answered 2022-Jan-31 at 10:32the solution i found was to downgrade the arrow gradle deps as shown below
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Install Optics
You can use Optics like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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