Optics | optical simulation | Machine Learning library

 by   danustc Python Version: Current License: No License

kandi X-RAY | Optics Summary

kandi X-RAY | Optics Summary

Optics is a Python library typically used in Artificial Intelligence, Machine Learning, Numpy applications. Optics has no bugs, it has no vulnerabilities and it has low support. However Optics build file is not available. You can download it from GitHub.

This is a small package of microscopy data processing. Can be used in combination with InControl package or for data analysis. Author: danustc Required package:.
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            kandi-support Support

              Optics has a low active ecosystem.
              It has 7 star(s) with 3 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              Optics has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of Optics is current.

            kandi-Quality Quality

              Optics has 0 bugs and 0 code smells.

            kandi-Security Security

              Optics has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              Optics code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              Optics does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              Optics releases are not available. You will need to build from source code and install.
              Optics has no build file. You will be need to create the build yourself to build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed Optics and discovered the below as its top functions. This is intended to give you an instant insight into Optics implemented functionality, and help decide if they suit your requirements.
            • Retrieve the exposure results for a group
            • Returns the phase of the model
            • Load a mat file
            • Retrieve the PSF
            • Visualize a pupil
            • Calculate the aberration coords of an observer
            • Determine the intersection of a plane line
            • Calculates the aberration co - correlation coefficient
            • Return the incident vector
            • Function for dumbby_by
            • Plots a lineplot onto the stack
            • Create a slice from a stack
            • Calculate the chain intersection
            • R Calculates the reflection of the reflection vector
            • Plot a PSF onto a plane
            • Compute the CRL coefficient
            • Set zern mode
            • Convert modulations to si images
            • Calculate the PSF lens scan
            • Read a single segment
            • Load all pupil functions in a folder
            • Calculate the PSF for a given modulation
            • Load FWHM files
            • Create a cross plot
            • Load PSF files in folder
            • Visualize a PUPIL image
            • Returns the magnetic plane modulus
            Get all kandi verified functions for this library.

            Optics Key Features

            No Key Features are available at this moment for Optics.

            Optics Examples and Code Snippets

            No Code Snippets are available at this moment for Optics.

            Community Discussions

            QUESTION

            How to Extract Variables from Multiple Aqua Modis netCDF files in R?
            Asked 2022-Apr-08 at 20:36

            Issue:

            I have a code in R that extracts monthly sea surface temperature (SST) values from a single Aqua Modis netCDF file (see below). However, I have a batch of 59 Aqua Modis netCDF files in one folder.

            Aim:

            My aim is to extract the variable's longitude, latitude, and SST from every netCDF file across all 59 netCDF files, convert them into raster files using the function stack::raster(), and then process these files.

            My data frame has 650 rows, which are dolphin IDs. I would like to extract the average SST for each dolphin ID over the time period of 2016-2021. Once I have extracted the average value SST per dolphin ID, I would then like to write these values into a .csv file named as a column called ' Average_SST'.

            Unfortunately, I cannot share my data because of ownership issues.

            I am a complete novice at spatial analysis and I have been trying to solve this conundrum for nearly 4 days by watching YouTube, and reading tutorials and Stack Overflow. I now feel really confused and I believe I will have to loop through all the files to achieve my objective.

            If anyone can help, I would like to thank you in advance.

            R-code:

            Open all 59 Aqua Modis netCDF files from their folder

            ...

            ANSWER

            Answered 2022-Apr-08 at 20:36

            You seem to misunderstand what a RasterStack or SpatRaster object is. You printed SST_brick and it clearly shows that it knows about the longitude and latitudes. You do not need to anything else.

            With

            Source https://stackoverflow.com/questions/71793528

            QUESTION

            Converting the Coordinate Reference System (CRS) of a Stack of 70+ Raster Files in stack::raster () Format
            Asked 2022-Apr-08 at 17:31

            Issue

            I have a batch of 70+ raster files with the object name 'ncin_SST' that I created using the function stack::raster() in the raster package. I want to change the coordinate reference system (CRS) WG84/34N.

            My ultimate aim is to interpolate the point data (dolphin IDs) in a shapefile to obtain the sea surface temperature (SST) values from each individual raster file within the stack of 70+ rasters.

            The source of the raster files are multiple Aqua Modis netCDF files contained in one folder in my documents and I downloaded the data from the 'Ocean Color Project' from NASA. My goal is to extract the average SST per ID over the time period across all 70+ raster files from 2016-to 2021.

            Firstly, I need to ensure that the shapefile and raster files have the same CRS and I have tried various different methods to achieve this output; however, unsuccessfully.

            Unfortunately, I cannot share my data online due to ownership of the data.

            Many thanks in advance if anyone can help with this error message.

            R-code:

            ...

            ANSWER

            Answered 2022-Apr-08 at 17:31

            To open a ncdf file with raster data you can simply do

            Source https://stackoverflow.com/questions/71781698

            QUESTION

            How to use Time series with the Sklearn OPTICS Algorithm?
            Asked 2022-Apr-02 at 14:40

            I'm trying to cluster time series. I also want to use Sklearn OPTICS. In the documentation it says that the input vector X should have dimensions (n_samples,n_features). My array is on the form (n_samples, n_time_stamps, n_features). Example in code further down.

            My question is how I can use the Fit-function from OPTICS with a time series. I know that people have used OPTICS and DBSCAN with time series. I just can't figure out how they have implemented it. Any help will be much appreciated.

            ...

            ANSWER

            Answered 2022-Apr-02 at 14:40

            Given the following np.array as an input:

            Source https://stackoverflow.com/questions/70955592

            QUESTION

            Is there an `id` of `prism' id Just`?
            Asked 2022-Mar-19 at 18:11

            I have a function called:

            ...

            ANSWER

            Answered 2022-Mar-19 at 18:11

            I'm not familiar with the idioms for that package, but I'd be tempted to use castOptic equality to turn the identity Iso into a Prism. That seems to get the idea across pretty well. However, I would expect that in most contexts you wouldn't actually need to convert it to a Prism; you can presumably use polymorphic functions (like preview and review) that will accept an Iso as well as a Prism.

            In your case, I suspect the right approach would be to write something like

            Source https://stackoverflow.com/questions/71540457

            QUESTION

            Unable to coerce during `DerivingVia` when using optics types like `Prism'`
            Asked 2022-Mar-16 at 02:03

            I'm unable to automatically derive instances using DerivingVia on any type that uses types from optics-core like Prism'; the error I get from compiler is:

            ...

            ANSWER

            Answered 2022-Mar-15 at 23:46

            Generally speaking, profunctor optics (such as those used in the lens and optics packages) aren't directly coercible. Roughly speaking, the internal representation of a prism is something like:

            Source https://stackoverflow.com/questions/71489589

            QUESTION

            What is a `Prism' s a` but with a context `ctx`?
            Asked 2022-Mar-15 at 21:44

            A type Prism' s a = Prism s s a a (hackage) can be thought of as a relation between some structure s and its member a, such that you can always produce the structure from the member (a -> s), but can only optionally retrieve the member from the structure (s -> Maybe a).

            This model is helpful in relating a sum type to one of its constructors ... as well as (more relevant here) in route encoding and decoding. If s is the encoded route URL, and a is the route type, then we have a -> s representing the encoding function (always succeeds), and s -> Maybe a representing the decoding function (can fail).

            Now, on to these pairs of functions, I want to add a "context" argument that is to be used in the encoding and decoding process (imagine that the decoding process needs to "look up" some database before successfully producing a relevant route). Basically:

            ...

            ANSWER

            Answered 2022-Mar-15 at 15:18

            I'm with @HTNW. You should just be able to define:

            Source https://stackoverflow.com/questions/71475510

            QUESTION

            SVG animation continues to loop after mouseleave
            Asked 2022-Feb-24 at 19:59

            I have 2 svg animations on the same page. They are each supposed to play on hover, and when the mouse leaves, they are to finish their infinite loop and stop. This works fine, unless I move from one directly to the other. The one I moved from continues to play until I move away from the second one. How can I make the first one stop when my mouse is on the second one? Below was my attempt.

            Here is a link to my codepen: https://codepen.io/ericsayag/pen/GROJVdp

            ...

            ANSWER

            Answered 2022-Feb-24 at 19:59

            Just call remove on mouseleave.

            I've removed some of the javascript that seemed non-functional and refactored it to remove the duplication.

            Source https://stackoverflow.com/questions/71256798

            QUESTION

            Which way is better to model TDE in MarkLogic? Two different data type for the same field or Cast the data type from OPTIC API?
            Asked 2022-Feb-21 at 21:55

            I want to know which way is better to model TDE with MarkLogic.

            We have XML documents with many different DateTime fields. Most of the time (99.99%), the timestamp part is of no biz use. I guess the remaining 0.01% use case is for data problem investigation like when this happened.

            TDE is neat and easy to expose document data to external BI tools via ODBC. All the columnar-type of modem BI tools (Power BI) prefer separating the Date and Timestamp fields from one single Datetime field. That will improve the BI tool performance significantly.

            There are two options to do that.

            1. Create two different fields in TDE from the same field. See the below screenshot. Most of the time, use Date type TDE field only.

            2. Create only one DateTime field in TDE and use type casting in OPTICS API or SQL (ML version of favour)

            Which way is better?

            ...

            ANSWER

            Answered 2022-Feb-21 at 21:55

            I would say model the data as you plan to use it. In your case, adding the extra TDE field. A few points:

            1. It should compress well.. Only one unique value per day per forest.

            2. MarkLogic is a clustered database. Queries are resolved per forest, then Per node and then on the evaluator node. You should always be careful about filter, sort, join on any dynamic value since sometimes to resolve the items, more data has to be pushed to the evaluator node. Storing the data as you plan to use it helps minimize the risk of suboptimal queries in general, but even more so on a clustered database.

            Source https://stackoverflow.com/questions/71212713

            QUESTION

            Lenses, the State monad, and Maps with known keys
            Asked 2022-Feb-11 at 18:14

            here is a puzzle that I keep on bumping into and that, I believe, no previous SO question has been addressing: How can I best use the lens library to set or get values within a State monad managing a nested data structure that involves Maps when I know for a fact that certain keys are present in the maps involved?

            Here is the puzzle ...

            ANSWER

            Answered 2022-Feb-09 at 11:43

            If you are sure that the key is present then you can use fromJust to turn the Maybe User into a User:

            Source https://stackoverflow.com/questions/71046129

            QUESTION

            how to configure ksp in my android gradle groovy dsl build files
            Asked 2022-Jan-31 at 10:32

            im investigating the io.arrow.kt functional programming library in my current android project.

            im having difficulty in configuring the optics module that employs ksp for source code generation

            my project gradle resembles this

            ...

            ANSWER

            Answered 2022-Jan-31 at 10:32

            the solution i found was to downgrade the arrow gradle deps as shown below

            Source https://stackoverflow.com/questions/70898387

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install Optics

            You can download it from GitHub.
            You can use Optics like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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