python-nexus | python-nexus - Generic nexus

by dlce-eva Python Version: 2.9.0 License: BSD-2-Clause

X-Ray Key Features Code Snippets(3)Community Discussions Vulnerabilities Install Support

kandi X-RAY | python-nexus Summary

python-nexus is a Python library. python-nexus has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install python-nexus' or download it from GitHub, PyPI.

python-nexus provides simple nexus file-format reading/writing tools, and a small collection of nexus manipulation scripts. Note: Due to a name clash with another python package, this package must be installed as pip install python-nexus but imported as import nexus.

Support

Quality

Security

License

Reuse

Support

python-nexus has a low active ecosystem.

It has 11 star(s) with 3 fork(s). There are 5 watchers for this library.

It had no major release in the last 12 months.

There are 1 open issues and 20 have been closed. On average issues are closed in 214 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of python-nexus is 2.9.0

Quality

python-nexus has no bugs reported.

Security

python-nexus has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

python-nexus is licensed under the BSD-2-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

python-nexus releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed python-nexus and discovered the below as its top functions. This is intended to give you an instant insight into python-nexus implemented functionality, and help decide if they suit your requirements.

Construct a NexusReader from a file
Set the block attributes
Iterate over blocks
Returns a sequence of blocks from a file
Run the tests
Get a Nexus reader object
Write output to file
Combine nexus blocks
Register the nexus parser
Add output to the given parser
Add Nexus command line options
Write to file
Write the block
Generate the code block
Iterate over lines
Yields formatted lines
Verify that the character has the correct count
Parse character state block
Main entry point
Decorator to wrap a nexus reader

Get all kandi verified functions for this library.

python-nexus Key Features

No Key Features are available at this moment for python-nexus.

python-nexus Examples and Code Snippets

python-nexus,Usage,Block Handlers:

Python

Lines of Code : 74

License : Permissive (BSD-2-Clause)

Copy

n.blockname.block
['line1', 'line2', ... ]

#NEXUS 

Begin data;
Dimensions ntax=4 nchar=2;
Format datatype=standard symbols="01" gap=-;
    Matrix
Harry              00
Simon              01
Betty              10
Louise             11
    ;
End;

be

python-nexus,Usage,Writing a Nexus File using NexusWriter

Python

Lines of Code : 18

License : Permissive (BSD-2-Clause)

Copy

>>> from nexus import NexusWriter
>>> n = NexusWriter()
>>> #Add a comment to appear in the header of the file
>>> n.add_comment("I am a comment")

>>> n.add('taxon1', 'Character1', 'A')
>>> n.dat

python-nexus,Usage,Python API

Python

Lines of Code : 18

License : Permissive (BSD-2-Clause)

Copy

>>> from nexus import NexusReader
>>> n = NexusReader.from_file('tests/examples/example.nex')

>>> n = NexusReader.from_string('#NEXUS\n\nbegin foo; ... end;')

>>> n.blocks
{'foo': }
>>> n = NexusReader('

Community Discussions

No Community Discussions are available at this moment for python-nexus.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install python-nexus

You can install using 'pip install python-nexus' or download it from GitHub, PyPI.
You can use python-nexus like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: