LiteRate | Fast estimation of immigration , birth and death rates | Machine Learning library

 by   dsilvestro Python Version: Current License: No License

kandi X-RAY | LiteRate Summary

kandi X-RAY | LiteRate Summary

LiteRate is a Python library typically used in Artificial Intelligence, Machine Learning applications. LiteRate has no bugs, it has build file available and it has low support. However LiteRate has 1 vulnerabilities. You can download it from GitHub.

LiteRate is a program implementing birth-death models within a Bayesian framework to estimates diversification dynamics from cultural occurence data. The model detects statistically-significant rate shifts in the history of the cultural population that theoretically correspond with major historical events and/or the action of evolutionary processes.
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            kandi-support Support

              LiteRate has a low active ecosystem.
              It has 10 star(s) with 3 fork(s). There are 3 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 0 open issues and 1 have been closed. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of LiteRate is current.

            kandi-Quality Quality

              LiteRate has no bugs reported.

            kandi-Security Security

              LiteRate has 1 vulnerability issues reported (0 critical, 1 high, 0 medium, 0 low).

            kandi-License License

              LiteRate does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              LiteRate releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed LiteRate and discovered the below as its top functions. This is intended to give you an instant insight into LiteRate implemented functionality, and help decide if they suit your requirements.
            • Run MCMC
            • This function is used to create new RVMCMCMCMCMC
            • Updates the sliding window with a sliding window
            • Calculates the r - squared r - squared correlation coefficient
            • Calculate the gamma rate for a given target k
            • Adds a shift weighted mean weighted mean weighted mean RJ
            • Removes weights from a weighted weighted mean weighted average
            • Sampling Sampling
            • Generate a conditional alpha proposal
            • Randomly select probability from a given vector
            • Simulate the model
            • Returns the carrier capacity at time t
            • Plots marginal rates
            • Combines multiple log files together
            • Calculate the hp for a gamma distribution
            • Calculates the likelihood of a poisson distribution
            • Calculate the likelihood likelihood for a given parameter distribution
            • Calculate prior
            • Calculate likelihood distribution for given parameter distribution
            • Read trend data
            • Calculate the r - squared r - squared ratio
            • Updates the sliding window index
            • Sample from the given simulator
            • Generate a dictionary of genotypes from a csv file
            • Combines multiple log files into one
            • Get core arguments
            • Compute the likelihood function
            • Generate GGPlots
            • Parse a tp file
            • Compute the bin centers for a given time series
            Get all kandi verified functions for this library.

            LiteRate Key Features

            No Key Features are available at this moment for LiteRate.

            LiteRate Examples and Code Snippets

            No Code Snippets are available at this moment for LiteRate.

            Community Discussions

            QUESTION

            Mixing section numbers and section headings
            Asked 2021-Jun-10 at 18:29

            We want to render text that looks like this:

            1. Introduction. Here is a named section.

            This section has a second paragraph.

            2. This one does not have a name. It is logically a part of the Introduction.

            3. The second section. This one does have a name.

            4. This (unnamed) section is part of a group beginning with “The second section”.

            5. This one is too.

            The ideal markup for this example would be

            ...

            ANSWER

            Answered 2021-Jun-10 at 18:29

            Something like this?

            Setting a counter on h1 and the sections that aren't following a h1.

            Adding inline-block to the h1 and the section that follows it to make them share the same row.

            EDIT: UPDATED WITH NEW CSS

            Source https://stackoverflow.com/questions/67911885

            QUESTION

            Latex Define Language for Listing
            Asked 2021-May-17 at 11:07

            I'm having trouble with defining my own language for a Latex Listing:

            ...

            ANSWER

            Answered 2021-May-17 at 11:07

            The problem is the - in your keywords, but you can tell your new language to treat it like a normal letter:

            Source https://stackoverflow.com/questions/67567255

            QUESTION

            Can't get Serilog to write to a RollingFile log
            Asked 2021-Apr-06 at 15:32

            I'm trying to use Serilog in a dotnet webapi app. I need logging to go to both the Console and a Rolling log file.

            Everything is coming out to the Console but nothing is appearing in the rolling log file and I'm not getting any errors anywhere.

            I have setup serilog in my code like so:

            ...

            ANSWER

            Answered 2021-Apr-06 at 15:32

            have you tried to change to static file name? does the path exists? it seems that the configuration on the readme from their github page is a bit differnt from yours: https://github.com/serilog/serilog-sinks-file#user-content-json-appsettingsjson-configuration:~:text=node%2C%20%3A-,%7B,%7D,-See%20the%20XML also maybe try to work your way back from setting it up in code then move back to config file?

            Source https://stackoverflow.com/questions/66970134

            QUESTION

            Adding new package breaks the .NET 5 application
            Asked 2021-Mar-27 at 18:31

            I've been trying to figure out why my console application fails the instant I introduce a new package. Using IdentityModel.OidcClient and Microsoft.AspNetCore.Server.Kestrel only works, but when adding Microsoft.Extensions.Configuration.Json it throws exception. I don't reference the new package in code either, I just add it to the project.

            Steps to reproduce:

            1. Clone https://github.com/IdentityModel/IdentityModel.OidcClient.Samples.git

            2. Upgrade NetCoreConsoleClient to .NET 5 (update packages).

            3. Remove Serilog.Sinks.Literate obsolete package.

            4. Remove call to .WriteTo.LiterateConsole for SeriLog in Program.cs and add using IdentityModel.Client.

            5. Add CancellationToken cancellationToken = new CancellationToken() parameter for InvokeAsync method in SystemBrowser class. The signature for the IBrowser interface has changed, the new method should look like this: public async Task InvokeAsync(BrowserOptions options, CancellationToken cancellationToken = new CancellationToken())

            6. Run application and login with alice/alice. Acquiring token is successful.

            7. Add package Microsoft.Extensions.Configuration.Json.

            8. Run application. It now throws exception Object reference not set to an instance of an object when writing to the http response.

            The exception occurs in LoopbackHttpListener.SetResult when writing to the response: ctx.Response.WriteAsync("

            You can now return to the application.");

            Why does adding a package only, have such an impact to the runtime?

            Project file:

            ...

            ANSWER

            Answered 2021-Mar-27 at 10:49

            The exception is thrown in

            Source https://stackoverflow.com/questions/66829853

            QUESTION

            How do I get this script to only run when a specific column is edited?
            Asked 2021-Mar-18 at 18:04

            Based purely on the execution log it appears this script is running EVERY time anyone edits the sheet, but I only need it to run when column 3 or column 7 are edited. What do I add into the script to tell it to do this? I'm not super script literate so any help is greatly appreciated!!

            ...

            ANSWER

            Answered 2021-Mar-18 at 18:04

            Is it weird that your code actually works on mine? If I understood your issue correctly, you want your script to be ran when columns 3 and 7. I don't see any issues on your script but I think this approach below should be better. We will use the e object to get your data.

            Code:

            Source https://stackoverflow.com/questions/66680439

            QUESTION

            Serilog not logging to Sentry levels different than Error
            Asked 2021-Mar-17 at 15:47

            I want log to sentry.io Information log level using serilog.

            In appsettings.json I made this config:

            ...

            ANSWER

            Answered 2021-Mar-17 at 15:47

            By default, the Sentry Serilog integration only sends events for log level Error or higher.

            For Info logs, the SDK keeps a ring buffer so when an error happens all related logs are included with that event.

            This can be configured though, you can send everything (Debug or higher for example): https://docs.sentry.io/platforms/dotnet/guides/serilog/#configuration

            In fact, I use this exact setup on NuGet Trends to capture any Warning or higher as event, and include any Debug or higher as breadcrumb:

            Here's the configuration:

            https://github.com/dotnet/nuget-trends/blob/dac67d1bd4707a94063b843571127eb055a4cc4f/src/NuGetTrends.Scheduler/appsettings.Production.json#L33-L34

            Source https://stackoverflow.com/questions/66655557

            QUESTION

            Maintaining separate scope context with serilog in asp.net core
            Asked 2021-Mar-05 at 21:47

            I am having an issue where the scope context is being shared between ILogger instances.

            Below is how I am configuring Serilog in my asp.net core 3.1 service and injecting ILogger. I have a WithClassContext extension that I call within each class's constructor in order to push the class name as a context property. What I am finding is that the wrong ClassName value appears in my logs.

            When I inspect the injected ILogger object in the debugger I find the following:

            ...

            ANSWER

            Answered 2021-Mar-05 at 21:47

            Based on what you're attempting to do, BeginScope does not appear to be the correct tool to solve the problem. The problem you're trying to solve is every log needs to have the ClassName as part of the log message. To do this you can modify the outputTemplate you're using to include {SourceContext} and then inside of your constructor instead of calling logger.WithClassContext() you call logger.ForContext().

            Please note that I have only modified the local environment logging in the following example.

            Source https://stackoverflow.com/questions/66359411

            QUESTION

            maintain grid layout widget as square
            Asked 2021-Feb-19 at 20:57

            This should be easy but I'm just becoming more and more confused looking at suggested answers that don't work. All I want to do is to be able to have a bunch of widgets in a grid layout where resizing the window will result in the widgets inside the grid being resized to fill the space where possible but retain their aspect ratio (square in this case as it's a 2x2 grid of squares).

            Here is the code without any of my failed attempts to do this. I originally planned to limit the window itself to being a fixed aspect ratio but couldn't get that to work either. I'll settle for the Frame (or other widget/layout) having this feature. The limiting square size is unimportant as long as it stretches and shrinks along with the window, while retaining the square contents. I'm using PySide6 here, but a solution with PyQt5 would be fine. C++, not so much though, I am literate in it. Is custom handling of resizing required? I can't seem to get heightForWidth working.

            ...

            ANSWER

            Answered 2021-Feb-19 at 20:43

            QLayouts (like the QGridLayout) are size handlers and are not visual elements so there is no point in saying they are square. On the other hand, the QGridLayout establishes the geometry of the widgets based mainly on the size of the container.

            So in this case you must make it have a square appearance based on the size of the window, so for this you must override the resizeEvent method and calculate the size of the maximum square inscribed in the window. and maybe you should also center the container.

            Source https://stackoverflow.com/questions/66282813

            QUESTION

            serilog not creating log files
            Asked 2021-Jan-29 at 16:20

            we are using the following piece of serilog code which writes events to console and file, the file and console logging works fine on my machine, but in the other developers machine console logging works but the file logging does not work and to add to the weirdness the"logs" folder gets created though. Is there any extra setup that needs to be done ?

            ...

            ANSWER

            Answered 2021-Jan-29 at 16:20

            The first step when troubleshooting any issue with Serilog is to turn on the SelfLog and see if there are any exceptions being caught. The error messages might give you a clue of what's the problem.

            Source https://stackoverflow.com/questions/65950440

            QUESTION

            Serilog different levels for different sinks
            Asked 2021-Jan-26 at 14:15

            I have the following piece of c# code for writing logs with multiple sinks (console and file), how do i restrict the console to log only (info, warn and error) and file to log everything.

            ...

            ANSWER

            Answered 2021-Jan-26 at 14:15

            You can set a value for restrictedToMinimumLevel for each sink, to raise the minimum level that it should log.

            It's explained in the documentation with examples:

            https://github.com/serilog/serilog/wiki/Configuration-Basics#overriding-per-sink

            Source https://stackoverflow.com/questions/65899872

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install LiteRate

            You can download it from GitHub.
            You can use LiteRate like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

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