LiteRate | Fast estimation of immigration , birth and death rates | Machine Learning library
kandi X-RAY | LiteRate Summary
kandi X-RAY | LiteRate Summary
LiteRate is a program implementing birth-death models within a Bayesian framework to estimates diversification dynamics from cultural occurence data. The model detects statistically-significant rate shifts in the history of the cultural population that theoretically correspond with major historical events and/or the action of evolutionary processes.
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Top functions reviewed by kandi - BETA
- Run MCMC
- This function is used to create new RVMCMCMCMCMC
- Updates the sliding window with a sliding window
- Calculates the r - squared r - squared correlation coefficient
- Calculate the gamma rate for a given target k
- Adds a shift weighted mean weighted mean weighted mean RJ
- Removes weights from a weighted weighted mean weighted average
- Sampling Sampling
- Generate a conditional alpha proposal
- Randomly select probability from a given vector
- Simulate the model
- Returns the carrier capacity at time t
- Plots marginal rates
- Combines multiple log files together
- Calculate the hp for a gamma distribution
- Calculates the likelihood of a poisson distribution
- Calculate the likelihood likelihood for a given parameter distribution
- Calculate prior
- Calculate likelihood distribution for given parameter distribution
- Read trend data
- Calculate the r - squared r - squared ratio
- Updates the sliding window index
- Sample from the given simulator
- Generate a dictionary of genotypes from a csv file
- Combines multiple log files into one
- Get core arguments
- Compute the likelihood function
- Generate GGPlots
- Parse a tp file
- Compute the bin centers for a given time series
LiteRate Key Features
LiteRate Examples and Code Snippets
Community Discussions
Trending Discussions on LiteRate
QUESTION
We want to render text that looks like this:
1. Introduction. Here is a named section.
This section has a second paragraph.
2. This one does not have a name. It is logically a part of the Introduction.
3. The second section. This one does have a name.
4. This (unnamed) section is part of a group beginning with “The second section”.
5. This one is too.
The ideal markup for this example would be
...ANSWER
Answered 2021-Jun-10 at 18:29Something like this?
Setting a counter on h1
and the sections
that aren't following a h1
.
Adding inline-block to the h1
and the section
that follows it to make them share the same row.
EDIT: UPDATED WITH NEW CSS
QUESTION
I'm having trouble with defining my own language for a Latex Listing:
...ANSWER
Answered 2021-May-17 at 11:07The problem is the -
in your keywords, but you can tell your new language to treat it like a normal letter:
QUESTION
I'm trying to use Serilog in a dotnet webapi app. I need logging to go to both the Console and a Rolling log file.
Everything is coming out to the Console but nothing is appearing in the rolling log file and I'm not getting any errors anywhere.
I have setup serilog in my code like so:
...ANSWER
Answered 2021-Apr-06 at 15:32have you tried to change to static file name? does the path exists? it seems that the configuration on the readme from their github page is a bit differnt from yours: https://github.com/serilog/serilog-sinks-file#user-content-json-appsettingsjson-configuration:~:text=node%2C%20%3A-,%7B,%7D,-See%20the%20XML also maybe try to work your way back from setting it up in code then move back to config file?
QUESTION
I've been trying to figure out why my console application fails the instant I introduce a new package. Using IdentityModel.OidcClient
and Microsoft.AspNetCore.Server.Kestrel
only works, but when adding Microsoft.Extensions.Configuration.Json
it throws exception. I don't reference the new package in code either, I just add it to the project.
Steps to reproduce:
Clone https://github.com/IdentityModel/IdentityModel.OidcClient.Samples.git
Upgrade NetCoreConsoleClient to .NET 5 (update packages).
Remove Serilog.Sinks.Literate obsolete package.
Remove call to
.WriteTo.LiterateConsole
for SeriLog in Program.cs and addusing IdentityModel.Client
.Add
CancellationToken cancellationToken = new CancellationToken()
parameter forInvokeAsync
method inSystemBrowser
class. The signature for theIBrowser
interface has changed, the new method should look like this:public async Task InvokeAsync(BrowserOptions options, CancellationToken cancellationToken = new CancellationToken())
Run application and login with alice/alice. Acquiring token is successful.
Add package
Microsoft.Extensions.Configuration.Json
.Run application. It now throws exception
Object reference not set to an instance of an object
when writing to the http response.
The exception occurs in LoopbackHttpListener.SetResult
when writing to the response: ctx.Response.WriteAsync("
You can now return to the application.
");
Why does adding a package only, have such an impact to the runtime?
Project file:
...ANSWER
Answered 2021-Mar-27 at 10:49The exception is thrown in
QUESTION
Based purely on the execution log it appears this script is running EVERY time anyone edits the sheet, but I only need it to run when column 3 or column 7 are edited. What do I add into the script to tell it to do this? I'm not super script literate so any help is greatly appreciated!!
...ANSWER
Answered 2021-Mar-18 at 18:04Is it weird that your code actually works on mine? If I understood your issue correctly, you want your script to be ran when columns 3 and 7. I don't see any issues on your script but I think this approach below should be better. We will use the e
object to get your data.
QUESTION
I want log to sentry.io
Information
log level using serilog.
In appsettings.json
I made this config:
ANSWER
Answered 2021-Mar-17 at 15:47By default, the Sentry Serilog integration only sends events for log level Error
or higher.
For Info
logs, the SDK keeps a ring buffer so when an error happens all related logs are included with that event.
This can be configured though, you can send everything (Debug
or higher for example): https://docs.sentry.io/platforms/dotnet/guides/serilog/#configuration
In fact, I use this exact setup on NuGet Trends to capture any Warning
or higher as event, and include any Debug
or higher as breadcrumb:
Here's the configuration:
QUESTION
I am having an issue where the scope context is being shared between ILogger
instances.
Below is how I am configuring Serilog in my asp.net core 3.1 service and injecting ILogger
. I have a WithClassContext
extension that I call within each class's constructor in order to push the class name as a context property. What I am finding is that the wrong ClassName
value appears in my logs.
When I inspect the injected ILogger object in the debugger I find the following:
...ANSWER
Answered 2021-Mar-05 at 21:47Based on what you're attempting to do, BeginScope does not appear to be the correct tool to solve the problem. The problem you're trying to solve is every log needs to have the ClassName as part of the log message. To do this you can modify the outputTemplate you're using to include {SourceContext}
and then inside of your constructor instead of calling logger.WithClassContext()
you call logger.ForContext()
.
Please note that I have only modified the local environment logging in the following example.
QUESTION
This should be easy but I'm just becoming more and more confused looking at suggested answers that don't work. All I want to do is to be able to have a bunch of widgets in a grid layout where resizing the window will result in the widgets inside the grid being resized to fill the space where possible but retain their aspect ratio (square in this case as it's a 2x2 grid of squares).
Here is the code without any of my failed attempts to do this. I originally planned to limit the window itself to being a fixed aspect ratio but couldn't get that to work either. I'll settle for the Frame (or other widget/layout) having this feature. The limiting square size is unimportant as long as it stretches and shrinks along with the window, while retaining the square contents. I'm using PySide6 here, but a solution with PyQt5 would be fine. C++, not so much though, I am literate in it. Is custom handling of resizing required? I can't seem to get heightForWidth working.
...ANSWER
Answered 2021-Feb-19 at 20:43QLayouts (like the QGridLayout) are size handlers and are not visual elements so there is no point in saying they are square. On the other hand, the QGridLayout establishes the geometry of the widgets based mainly on the size of the container.
So in this case you must make it have a square appearance based on the size of the window, so for this you must override the resizeEvent method and calculate the size of the maximum square inscribed in the window. and maybe you should also center the container.
QUESTION
we are using the following piece of serilog code which writes events to console and file, the file and console logging works fine on my machine, but in the other developers machine console logging works but the file logging does not work and to add to the weirdness the"logs" folder gets created though. Is there any extra setup that needs to be done ?
...ANSWER
Answered 2021-Jan-29 at 16:20The first step when troubleshooting any issue with Serilog is to turn on the SelfLog
and see if there are any exceptions being caught. The error messages might give you a clue of what's the problem.
QUESTION
I have the following piece of c# code for writing logs with multiple sinks (console and file), how do i restrict the console to log only (info, warn and error) and file to log everything.
...ANSWER
Answered 2021-Jan-26 at 14:15You can set a value for restrictedToMinimumLevel
for each sink, to raise the minimum level that it should log.
It's explained in the documentation with examples:
https://github.com/serilog/serilog/wiki/Configuration-Basics#overriding-per-sink
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install LiteRate
You can use LiteRate like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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