pial | Python Imaging Abstraction Library

by duointeractive Python Version: Current License: BSD-3-Clause

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | pial Summary

pial is a Python library. pial has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Python Imaging Abstraction Library

Support

Quality

Security

License

Reuse

Support

pial has a low active ecosystem.

It has 5 star(s) with 4 fork(s). There are 9 watchers for this library.

It had no major release in the last 6 months.

pial has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of pial is current.

Quality

pial has no bugs reported.

Security

pial has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

pial is licensed under the BSD-3-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

pial releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Top functions reviewed by kandi - BETA

kandi has reviewed pial and discovered the below as its top functions. This is intended to give you an instant insight into pial implemented functionality, and help decide if they suit your requirements.

Crop the given image
Parse crop
Crop the image
Return the offset from a crop option
Get the size of an image
Scale an image
Scale image
Scale the image
Convert a number to an integer
Write image to dest_fobj
Get raw data
Gets the ratio of the given image

Get all kandi verified functions for this library.

pial Key Features

No Key Features are available at this moment for pial.

pial Examples and Code Snippets

No Code Snippets are available at this moment for pial.

Community Discussions

Trending Discussions on pial

Does vtk mesh generation change coordinates?

Using XTK or AMI.js to display Freesurfer while/pial objects on T1.mgz

QUESTION

Does vtk mesh generation change coordinates?

Asked 2020-Mar-06 at 03:23

I converted nifti file to vtk using python-implemented vtk. The main function was vtkMarchingCubes.

...

ANSWER

Answered 2020-Mar-05 at 14:16

VTK's MarchingCubes filter should produce triangles in the same coordinate system as the volume. The only issue is that the Nifti image also includes a coordinate system of the image, and VTK is probably not correctly using it. I'd guess there's a transform in the Nifti that VTK isn't properly using.

Try using either Slicer (slicer.org) or ITK-Snap (itksnap.org). They do better at maintaining coordinate systems for medical images.

Source https://stackoverflow.com/questions/60544677

QUESTION

Using XTK or AMI.js to display Freesurfer while/pial objects on T1.mgz

Asked 2018-Feb-12 at 08:50

I'd like to recreate a web version of FreeSurfer pial/white surfaces overlaid on T1.mgz similar to the first freeview image at https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/PialEdits_freeview. Using XTK I can get something that hints at that using advice from Othographic Projection in XTK. The code I used to create the image (along with kruft from multiple attempts) is below the image.

Is this possible with XTK or should I switch over to AMI.js (which has freesurfer surfaces and MGZ file formats on their roadmap but are not implemented)?

In either case, pointers to how to accomplish this would be appreciated.

Thanks.

...

ANSWER

Answered 2018-Feb-12 at 08:50

You can now do it in AMI (thanks to your PR: https://fnndsc.github.io/ami/#viewers_quadview)

Display intersection between a mesh and a plane
Post process the intersection to display the contours.

There are different techniques to display mesh/plane intersection:

With a stencil buffer (https://github.com/daign/clipping-with-caps)
Playing the the mesh opacity (https://github.com/FNNDSC/ami/tree/dev/examples/viewers_quadview)

All those techniques are computationally expensive at it requires 3 renders pass to display contours of 1 mesh and there may be a better approach but not sure what would be the best alternative.

HTH

Source https://stackoverflow.com/questions/48425386

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pial

You can download it from GitHub.
You can use pial like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: