dropSeqPipe-dak | run dropseq - slight modifications from original dropSeqPipe

by dylkot Python Version: Current License: CC-BY-SA-4.0

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kandi X-RAY | dropSeqPipe-dak Summary

dropSeqPipe-dak is a Python library. dropSeqPipe-dak has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However dropSeqPipe-dak build file is not available. You can download it from GitHub.

This pipeline is based on snakemake and the dropseq tools provided by the McCarroll Lab. It allows to go from raw data of your Single Cell RNA seq experiment until the final count matrix with QC plots along the way. This is the tool we use in our lab to improve our wetlab protocol as well as provide an easy framework to reproduce and compare different experiments with different parameters.

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Support

dropSeqPipe-dak has a low active ecosystem.

It has 0 star(s) with 0 fork(s). There are no watchers for this library.

It had no major release in the last 6 months.

dropSeqPipe-dak has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of dropSeqPipe-dak is current.

Quality

dropSeqPipe-dak has no bugs reported.

Security

dropSeqPipe-dak has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

dropSeqPipe-dak is licensed under the CC-BY-SA-4.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

dropSeqPipe-dak releases are not available. You will need to build from source code and install.

dropSeqPipe-dak has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

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dropSeqPipe-dak Key Features

No Key Features are available at this moment for dropSeqPipe-dak.

dropSeqPipe-dak Examples and Code Snippets

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Community Discussions

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Vulnerabilities

No vulnerabilities reported

Install dropSeqPipe-dak

If you simply want to use this workflow, download and extract the latest release. If you intend to modify and further develop this workflow, fork this reposity. Please consider providing any generally applicable modifications via a pull request. In any case, if you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this repository and, once available, its DOI.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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