ST_simulation | repo provides a collection of scripts

by emdann Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | ST_simulation Summary

ST_simulation is a Python library. ST_simulation has no bugs, it has no vulnerabilities and it has low support. However ST_simulation build file is not available. You can download it from GitHub.

This repo provides a collection of scripts used to generate simulated spatial transcriptomics data as a mixture of single-cell transcriptomics profiles (adapting code and model from Andersson et al. 2019). Parameters are chosen to simulate the characteristics of 10X Genomics Visium chips.

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Quality

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Support

ST_simulation has a low active ecosystem.

It has 3 star(s) with 0 fork(s). There are 1 watchers for this library.

It had no major release in the last 6 months.

There are 0 open issues and 6 have been closed. On average issues are closed in 97 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of ST_simulation is current.

Quality

ST_simulation has no bugs reported.

Security

ST_simulation has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

ST_simulation does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

ST_simulation releases are not available. You will need to build from source code and install.

ST_simulation has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed ST_simulation and discovered the below as its top functions. This is intended to give you an instant insight into ST_simulation implemented functionality, and help decide if they suit your requirements.

Assemble the spot index
Assemble a spot expression
Read synthetic_ST

Get all kandi verified functions for this library.

ST_simulation Key Features

No Key Features are available at this moment for ST_simulation.

ST_simulation Examples and Code Snippets

No Code Snippets are available at this moment for ST_simulation.

Community Discussions

No Community Discussions are available at this moment for ST_simulation.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install ST_simulation

You can download it from GitHub.
You can use ST_simulation like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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